
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:13 04/04/2011

Input data from file "683-tomodel-phylip/chr2_24859.phylip" (7 taxa, 1092 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3082.5326	6205.0652	0.5559	0.5559
GTRI	20	-3083.4396	6206.8791	0.2244	0.7803
GTRIG	21	-3082.4612	6206.9223	0.2196	1.0000
HKYG	16	-3096.6291	6225.2582	0.0000	1.0000
HKYI	16	-3097.1658	6226.3316	0.0000	1.0000
HKYIG	17	-3096.6164	6227.2328	0.0000	1.0000
SYMG	17	-3109.1404	6252.2808	0.0000	1.0000
SYMI	17	-3109.4246	6252.8493	0.0000	1.0000
SYMIG	18	-3109.1485	6254.2969	0.0000	1.0000
K2PG	13	-3118.2111	6262.4223	0.0000	1.0000
K2PI	13	-3118.4548	6262.9095	0.0000	1.0000
K2PIG	14	-3118.2387	6264.4773	0.0000	1.0000
GTR	19	-3116.0251	6270.0501	0.0000	1.0000
HKY	15	-3128.0423	6286.0846	0.0000	1.0000
SYM	16	-3138.0974	6308.1947	0.0000	1.0000
K2P	12	-3147.3208	6318.6416	0.0000	1.0000
F81G	15	-3152.9614	6335.9228	0.0000	1.0000
F81I	15	-3153.3511	6336.7021	0.0000	1.0000
F81IG	16	-3152.9777	6337.9554	0.0000	1.0000
JC69G	12	-3169.7408	6363.4817	0.0000	1.0000
JC69I	12	-3169.9473	6363.8947	0.0000	1.0000
JC69IG	13	-3169.4610	6364.9220	0.0000	1.0000
F81	14	-3181.7565	6391.5130	0.0000	1.0000
JC69	11	-3197.4534	6416.9068	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-3082.5326	6304.9805	0.3459	0.3459
HKYG	16	-3096.6291	6305.1904	0.3115	0.6574
HKYI	16	-3097.1658	6306.2638	0.1821	0.8395
GTRI	20	-3083.4396	6306.7945	0.1397	0.9792
GTRIG	21	-3082.4612	6311.8334	0.0112	0.9904
HKYIG	17	-3096.6164	6312.1608	0.0095	1.0000
K2PG	13	-3118.2111	6327.3672	0.0000	1.0000
K2PI	13	-3118.4548	6327.8545	0.0000	1.0000
K2PIG	14	-3118.2387	6334.4180	0.0000	1.0000
SYMG	17	-3109.1404	6337.2089	0.0000	1.0000
SYMI	17	-3109.4246	6337.7773	0.0000	1.0000
SYMIG	18	-3109.1485	6344.2207	0.0000	1.0000
HKY	15	-3128.0423	6361.0211	0.0000	1.0000
GTR	19	-3116.0251	6364.9697	0.0000	1.0000
K2P	12	-3147.3208	6378.5908	0.0000	1.0000
SYM	16	-3138.0974	6388.1270	0.0000	1.0000
F81G	15	-3152.9614	6410.8593	0.0000	1.0000
F81I	15	-3153.3511	6411.6386	0.0000	1.0000
F81IG	16	-3152.9777	6417.8877	0.0000	1.0000
JC69G	12	-3169.7408	6423.4309	0.0000	1.0000
JC69I	12	-3169.9473	6423.8439	0.0000	1.0000
JC69IG	13	-3169.4610	6429.8669	0.0000	1.0000
F81	14	-3181.7565	6461.4537	0.0000	1.0000
JC69	11	-3197.4534	6471.8602	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr2_24859.phylip = 1 - 1092;
 Partition Dummy = 1:683-tomodel-phylip/chr2_24859.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr2_24859.phylip = 1 - 1092;
 Partition Dummy = 1:683-tomodel-phylip/chr2_24859.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr2_24859.phylip = 1 - 1092;
 Partition Dummy = 1:683-tomodel-phylip/chr2_24859.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

