
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:13 04/04/2011

Input data from file "683-tomodel-phylip/chr2_24714.phylip" (7 taxa, 925 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2607.7695	5255.5391	0.4503	0.4503
GTRIG	21	-2607.7696	5257.5392	0.1657	0.6160
HKYG	16	-2612.8632	5257.7264	0.1509	0.7669
GTRI	20	-2609.0430	5258.0859	0.1260	0.8929
HKYIG	17	-2612.8633	5259.7266	0.0555	0.9484
HKYI	16	-2614.0900	5260.1801	0.0442	0.9926
GTR	19	-2613.3230	5264.6460	0.0047	0.9974
HKY	15	-2617.9130	5265.8259	0.0026	1.0000
K2PG	13	-2641.7866	5309.5732	0.0000	1.0000
K2PIG	14	-2641.7867	5311.5733	0.0000	1.0000
K2PI	13	-2642.9334	5311.8668	0.0000	1.0000
SYMG	17	-2639.5097	5313.0194	0.0000	1.0000
SYMIG	18	-2639.5098	5315.0196	0.0000	1.0000
SYMI	17	-2640.6355	5315.2711	0.0000	1.0000
K2P	12	-2646.1180	5316.2359	0.0000	1.0000
SYM	16	-2643.8747	5319.7495	0.0000	1.0000
F81G	15	-2672.3008	5374.6016	0.0000	1.0000
F81IG	16	-2672.3009	5376.6018	0.0000	1.0000
F81I	15	-2673.4093	5376.8187	0.0000	1.0000
F81	14	-2676.3455	5380.6910	0.0000	1.0000
JC69G	12	-2695.8425	5415.6850	0.0000	1.0000
JC69IG	13	-2695.8426	5417.6851	0.0000	1.0000
JC69I	12	-2696.8910	5417.7819	0.0000	1.0000
JC69	11	-2699.7128	5421.4256	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2612.8632	5335.0031	0.6573	0.6573
HKYI	16	-2614.0900	5337.4568	0.1927	0.8500
HKY	15	-2617.9130	5338.2728	0.1282	0.9782
HKYIG	17	-2612.8633	5341.8331	0.0216	0.9998
GTRG	20	-2607.7695	5352.1350	0.0001	0.9999
GTRI	20	-2609.0430	5354.6818	0.0000	1.0000
GTR	19	-2613.3230	5356.4121	0.0000	1.0000
GTRIG	21	-2607.7696	5358.9649	0.0000	1.0000
K2PG	13	-2641.7866	5372.3605	0.0000	1.0000
K2P	12	-2646.1180	5374.1935	0.0000	1.0000
K2PI	13	-2642.9334	5374.6541	0.0000	1.0000
K2PIG	14	-2641.7867	5379.1905	0.0000	1.0000
SYMG	17	-2639.5097	5395.1259	0.0000	1.0000
SYM	16	-2643.8747	5397.0262	0.0000	1.0000
SYMI	17	-2640.6355	5397.3776	0.0000	1.0000
SYMIG	18	-2639.5098	5401.9559	0.0000	1.0000
F81G	15	-2672.3008	5447.0485	0.0000	1.0000
F81	14	-2676.3455	5448.3081	0.0000	1.0000
F81I	15	-2673.4093	5449.2656	0.0000	1.0000
F81IG	16	-2672.3009	5453.8785	0.0000	1.0000
JC69G	12	-2695.8425	5473.6425	0.0000	1.0000
JC69	11	-2699.7128	5474.5533	0.0000	1.0000
JC69I	12	-2696.8910	5475.7394	0.0000	1.0000
JC69IG	13	-2695.8426	5480.4725	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr2_24714.phylip = 1 - 925;
 Partition Dummy = 1:683-tomodel-phylip/chr2_24714.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr2_24714.phylip = 1 - 925;
 Partition Dummy = 1:683-tomodel-phylip/chr2_24714.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr2_24714.phylip = 1 - 925;
 Partition Dummy = 1:683-tomodel-phylip/chr2_24714.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

