
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:12 04/04/2011

Input data from file "683-tomodel-phylip/chr2_23175.phylip" (7 taxa, 898 characters)

Minimum AIC  model: GTRI
Minimum AICc model: GTRI
Minimum BIC  model: HKYI


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRI	20	-2825.8725	5691.7450	0.4357	0.4357
GTRG	20	-2826.0808	5692.1616	0.3537	0.7894
GTRIG	21	-2825.6031	5693.2062	0.2098	0.9992
HKYI	16	-2836.7961	5705.5922	0.0004	0.9996
HKYG	16	-2837.5638	5707.1275	0.0002	0.9998
HKYIG	17	-2836.6477	5707.2954	0.0002	1.0000
GTR	19	-2848.6058	5735.2116	0.0000	1.0000
HKY	15	-2862.2270	5754.4541	0.0000	1.0000
SYMI	17	-2881.5998	5797.1995	0.0000	1.0000
SYMG	17	-2882.3877	5798.7755	0.0000	1.0000
K2PI	13	-2886.5303	5799.0605	0.0000	1.0000
SYMIG	18	-2881.5945	5799.1891	0.0000	1.0000
K2PG	13	-2887.6441	5801.2882	0.0000	1.0000
K2PIG	14	-2887.4121	5802.8242	0.0000	1.0000
SYM	16	-2907.6716	5847.3432	0.0000	1.0000
F81I	15	-2911.1057	5852.2114	0.0000	1.0000
K2P	12	-2914.7711	5853.5422	0.0000	1.0000
F81G	15	-2911.7897	5853.5794	0.0000	1.0000
F81IG	16	-2911.1822	5854.3643	0.0000	1.0000
F81	14	-2935.2377	5898.4753	0.0000	1.0000
JC69I	12	-2951.8688	5927.7376	0.0000	1.0000
JC69G	12	-2952.4748	5928.9497	0.0000	1.0000
JC69IG	13	-2951.8702	5929.7403	0.0000	1.0000
JC69	11	-2977.9098	5977.8195	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-2836.7961	5782.3949	0.6133	0.6133
HKYG	16	-2837.5638	5783.9303	0.2846	0.8980
GTRI	20	-2825.8725	5787.7484	0.0422	0.9402
GTRG	20	-2826.0808	5788.1650	0.0343	0.9744
HKYIG	17	-2836.6477	5788.8983	0.0237	0.9982
GTRIG	21	-2825.6031	5794.0098	0.0018	1.0000
GTR	19	-2848.6058	5826.4149	0.0000	1.0000
HKY	15	-2862.2270	5826.4567	0.0000	1.0000
K2PI	13	-2886.5303	5861.4627	0.0000	1.0000
K2PG	13	-2887.6441	5863.6905	0.0000	1.0000
K2PIG	14	-2887.4121	5870.0266	0.0000	1.0000
SYMI	17	-2881.5998	5878.8024	0.0000	1.0000
SYMG	17	-2882.3877	5880.3784	0.0000	1.0000
SYMIG	18	-2881.5945	5885.5921	0.0000	1.0000
K2P	12	-2914.7711	5911.1442	0.0000	1.0000
SYM	16	-2907.6716	5924.1459	0.0000	1.0000
F81I	15	-2911.1057	5924.2139	0.0000	1.0000
F81G	15	-2911.7897	5925.5820	0.0000	1.0000
F81IG	16	-2911.1822	5931.1671	0.0000	1.0000
F81	14	-2935.2377	5965.6777	0.0000	1.0000
JC69I	12	-2951.8688	5985.3396	0.0000	1.0000
JC69G	12	-2952.4748	5986.5517	0.0000	1.0000
JC69IG	13	-2951.8702	5992.1426	0.0000	1.0000
JC69	11	-2977.9098	6030.6214	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRI)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr2_23175.phylip = 1 - 898;
 Partition Dummy = 1:683-tomodel-phylip/chr2_23175.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRI)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr2_23175.phylip = 1 - 898;
 Partition Dummy = 1:683-tomodel-phylip/chr2_23175.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr2_23175.phylip = 1 - 898;
 Partition Dummy = 1:683-tomodel-phylip/chr2_23175.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

