
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:13 04/04/2011

Input data from file "683-tomodel-phylip/chr26_2189.phylip" (7 taxa, 977 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3081.0431	6202.0863	0.4250	0.4250
GTRI	20	-3081.0841	6202.1681	0.4080	0.8330
GTRIG	21	-3080.9776	6203.9552	0.1670	1.0000
HKYG	16	-3103.6366	6239.2732	0.0000	1.0000
HKYIG	17	-3103.5605	6241.1210	0.0000	1.0000
HKYI	16	-3106.1227	6244.2454	0.0000	1.0000
GTR	19	-3118.1835	6274.3670	0.0000	1.0000
SYMG	17	-3132.7645	6299.5291	0.0000	1.0000
SYMI	17	-3135.1566	6304.3132	0.0000	1.0000
SYMIG	18	-3135.8373	6307.6747	0.0000	1.0000
K2PG	13	-3142.0949	6310.1899	0.0000	1.0000
HKY	15	-3140.8796	6311.7592	0.0000	1.0000
K2PIG	14	-3141.9908	6311.9816	0.0000	1.0000
K2PI	13	-3144.6158	6315.2316	0.0000	1.0000
F81G	15	-3158.6469	6347.2938	0.0000	1.0000
F81IG	16	-3158.6436	6349.2872	0.0000	1.0000
F81I	15	-3159.7603	6349.5205	0.0000	1.0000
SYM	16	-3169.4663	6370.9326	0.0000	1.0000
K2P	12	-3182.2146	6388.4292	0.0000	1.0000
JC69G	12	-3193.5086	6411.0171	0.0000	1.0000
JC69IG	13	-3193.5041	6413.0083	0.0000	1.0000
JC69I	12	-3194.6880	6413.3759	0.0000	1.0000
F81	14	-3193.1175	6414.2350	0.0000	1.0000
JC69	11	-3226.7759	6475.5518	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-3081.0431	6299.7760	0.5014	0.5014
GTRI	20	-3081.0841	6299.8579	0.4813	0.9828
GTRIG	21	-3080.9776	6306.5294	0.0171	0.9999
HKYG	16	-3103.6366	6317.4250	0.0001	1.0000
HKYI	16	-3106.1227	6322.3972	0.0000	1.0000
HKYIG	17	-3103.5605	6324.1572	0.0000	1.0000
GTR	19	-3118.1835	6367.1722	0.0000	1.0000
K2PG	13	-3142.0949	6373.6882	0.0000	1.0000
K2PI	13	-3144.6158	6378.7300	0.0000	1.0000
K2PIG	14	-3141.9908	6380.3644	0.0000	1.0000
SYMG	17	-3132.7645	6382.5653	0.0000	1.0000
HKY	15	-3140.8796	6385.0265	0.0000	1.0000
SYMI	17	-3135.1566	6387.3495	0.0000	1.0000
SYMIG	18	-3135.8373	6395.5955	0.0000	1.0000
F81G	15	-3158.6469	6420.5611	0.0000	1.0000
F81I	15	-3159.7603	6422.7878	0.0000	1.0000
F81IG	16	-3158.6436	6427.4390	0.0000	1.0000
K2P	12	-3182.2146	6447.0430	0.0000	1.0000
SYM	16	-3169.4663	6449.0844	0.0000	1.0000
JC69G	12	-3193.5086	6469.6310	0.0000	1.0000
JC69I	12	-3194.6880	6471.9898	0.0000	1.0000
JC69IG	13	-3193.5041	6476.5066	0.0000	1.0000
F81	14	-3193.1175	6482.6178	0.0000	1.0000
JC69	11	-3226.7759	6529.2812	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr26_2189.phylip = 1 - 977;
 Partition Dummy = 1:683-tomodel-phylip/chr26_2189.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr26_2189.phylip = 1 - 977;
 Partition Dummy = 1:683-tomodel-phylip/chr26_2189.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr26_2189.phylip = 1 - 977;
 Partition Dummy = 1:683-tomodel-phylip/chr26_2189.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

