
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:12 04/04/2011

Input data from file "683-tomodel-phylip/chr1_31076.phylip" (7 taxa, 1144 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3582.6735	7205.3469	0.6969	0.6969
GTRIG	21	-3582.6874	7207.3749	0.2528	0.9498
GTRI	20	-3585.4124	7210.8249	0.0450	0.9948
HKYG	16	-3591.9480	7215.8960	0.0036	0.9984
HKYIG	17	-3591.9477	7217.8955	0.0013	0.9997
HKYI	16	-3594.4080	7220.8160	0.0003	1.0000
GTR	19	-3611.2499	7260.4997	0.0000	1.0000
HKY	15	-3618.9910	7267.9821	0.0000	1.0000
K2PG	13	-3638.8885	7303.7770	0.0000	1.0000
K2PIG	14	-3638.8939	7305.7878	0.0000	1.0000
SYMG	17	-3637.4455	7308.8909	0.0000	1.0000
K2PI	13	-3641.7901	7309.5802	0.0000	1.0000
SYMIG	18	-3637.4475	7310.8950	0.0000	1.0000
SYMI	17	-3640.3191	7314.6381	0.0000	1.0000
K2P	12	-3665.2368	7354.4736	0.0000	1.0000
SYM	16	-3663.5492	7359.0984	0.0000	1.0000
F81G	15	-3687.4226	7404.8452	0.0000	1.0000
F81IG	16	-3690.4242	7412.8485	0.0000	1.0000
F81I	15	-3692.6680	7415.3360	0.0000	1.0000
F81	14	-3710.9748	7449.9496	0.0000	1.0000
JC69G	12	-3724.4018	7472.8037	0.0000	1.0000
JC69IG	13	-3724.4018	7474.8037	0.0000	1.0000
JC69I	12	-3726.9130	7477.8260	0.0000	1.0000
JC69	11	-3748.2236	7518.4471	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3591.9480	7296.5726	0.8897	0.8897
HKYI	16	-3594.4080	7301.4925	0.0760	0.9658
HKYIG	17	-3591.9477	7303.6143	0.0263	0.9921
GTRG	20	-3582.6735	7306.1927	0.0072	0.9993
GTRI	20	-3585.4124	7311.6706	0.0005	0.9998
GTRIG	21	-3582.6874	7313.2629	0.0002	1.0000
HKY	15	-3618.9910	7343.6164	0.0000	1.0000
GTR	19	-3611.2499	7356.3031	0.0000	1.0000
K2PG	13	-3638.8885	7369.3267	0.0000	1.0000
K2PI	13	-3641.7901	7375.1299	0.0000	1.0000
K2PIG	14	-3638.8939	7376.3798	0.0000	1.0000
SYMG	17	-3637.4455	7394.6098	0.0000	1.0000
SYMI	17	-3640.3191	7400.3570	0.0000	1.0000
SYMIG	18	-3637.4475	7401.6561	0.0000	1.0000
K2P	12	-3665.2368	7414.9811	0.0000	1.0000
SYM	16	-3663.5492	7439.7750	0.0000	1.0000
F81G	15	-3687.4226	7480.4795	0.0000	1.0000
F81I	15	-3692.6680	7490.9703	0.0000	1.0000
F81IG	16	-3690.4242	7493.5251	0.0000	1.0000
F81	14	-3710.9748	7520.5416	0.0000	1.0000
JC69G	12	-3724.4018	7533.3111	0.0000	1.0000
JC69I	12	-3726.9130	7538.3334	0.0000	1.0000
JC69IG	13	-3724.4018	7540.3534	0.0000	1.0000
JC69	11	-3748.2236	7573.9123	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr1_31076.phylip = 1 - 1144;
 Partition Dummy = 1:683-tomodel-phylip/chr1_31076.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr1_31076.phylip = 1 - 1144;
 Partition Dummy = 1:683-tomodel-phylip/chr1_31076.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr1_31076.phylip = 1 - 1144;
 Partition Dummy = 1:683-tomodel-phylip/chr1_31076.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

