
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:11 04/04/2011

Input data from file "683-tomodel-phylip/chr1_28645.phylip" (7 taxa, 926 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1990.5126	4021.0252	0.3042	0.3042
GTRIG	21	-1989.5144	4021.0288	0.3037	0.6079
GTRI	20	-1990.6849	4021.3698	0.2561	0.8639
HKYG	16	-1996.3725	4024.7450	0.0474	0.9113
HKYIG	17	-1995.4212	4024.8424	0.0451	0.9564
HKYI	16	-1996.4550	4024.9099	0.0436	1.0000
GTR	19	-2009.7086	4057.4171	0.0000	1.0000
HKY	15	-2015.5165	4061.0330	0.0000	1.0000
K2PG	13	-2017.8900	4061.7800	0.0000	1.0000
K2PIG	14	-2016.9872	4061.9743	0.0000	1.0000
K2PI	13	-2018.0174	4062.0349	0.0000	1.0000
SYMG	17	-2015.2593	4064.5185	0.0000	1.0000
SYMIG	18	-2014.3425	4064.6851	0.0000	1.0000
SYMI	17	-2015.4383	4064.8767	0.0000	1.0000
F81G	15	-2030.2939	4090.5878	0.0000	1.0000
F81I	15	-2030.4876	4090.9751	0.0000	1.0000
F81IG	16	-2029.7127	4091.4254	0.0000	1.0000
K2P	12	-2036.5247	4097.0493	0.0000	1.0000
SYM	16	-2033.5155	4099.0311	0.0000	1.0000
JC69G	12	-2049.3012	4122.6024	0.0000	1.0000
JC69I	12	-2049.4889	4122.9779	0.0000	1.0000
F81	14	-2047.6296	4123.2592	0.0000	1.0000
JC69IG	13	-2048.7171	4123.4341	0.0000	1.0000
JC69	11	-2066.6123	4155.2245	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1996.3725	4102.0390	0.4983	0.4983
HKYI	16	-1996.4550	4102.2039	0.4589	0.9572
HKYIG	17	-1995.4212	4106.9673	0.0424	0.9996
GTRG	20	-1990.5126	4117.6426	0.0002	0.9998
GTRI	20	-1990.6849	4117.9873	0.0002	1.0000
GTRIG	21	-1989.5144	4122.4772	0.0000	1.0000
K2PG	13	-2017.8900	4124.5813	0.0000	1.0000
K2PI	13	-2018.0174	4124.8362	0.0000	1.0000
K2PIG	14	-2016.9872	4129.6066	0.0000	1.0000
HKY	15	-2015.5165	4133.4961	0.0000	1.0000
SYMG	17	-2015.2593	4146.6434	0.0000	1.0000
SYMI	17	-2015.4383	4147.0015	0.0000	1.0000
GTR	19	-2009.7086	4149.2037	0.0000	1.0000
SYMIG	18	-2014.3425	4151.6408	0.0000	1.0000
K2P	12	-2036.5247	4155.0198	0.0000	1.0000
F81G	15	-2030.2939	4163.0509	0.0000	1.0000
F81I	15	-2030.4876	4163.4382	0.0000	1.0000
F81IG	16	-2029.7127	4168.7194	0.0000	1.0000
SYM	16	-2033.5155	4176.3251	0.0000	1.0000
JC69G	12	-2049.3012	4180.5729	0.0000	1.0000
JC69I	12	-2049.4889	4180.9484	0.0000	1.0000
JC69IG	13	-2048.7171	4186.2355	0.0000	1.0000
F81	14	-2047.6296	4190.8914	0.0000	1.0000
JC69	11	-2066.6123	4208.3641	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr1_28645.phylip = 1 - 926;
 Partition Dummy = 1:683-tomodel-phylip/chr1_28645.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr1_28645.phylip = 1 - 926;
 Partition Dummy = 1:683-tomodel-phylip/chr1_28645.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr1_28645.phylip = 1 - 926;
 Partition Dummy = 1:683-tomodel-phylip/chr1_28645.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

