
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:11 04/04/2011

Input data from file "683-tomodel-phylip/chr1_22087.phylip" (7 taxa, 888 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2587.0815	5214.1629	0.4564	0.4564
GTRI	20	-2587.3895	5214.7791	0.3354	0.7918
GTRIG	21	-2587.1018	5216.2036	0.1645	0.9563
HKYG	16	-2594.1905	5220.3809	0.0204	0.9767
HKYI	16	-2594.4372	5220.8743	0.0159	0.9926
HKYIG	17	-2594.2089	5222.4179	0.0074	1.0000
GTR	19	-2600.5712	5239.1423	0.0000	1.0000
HKY	15	-2607.7979	5245.5959	0.0000	1.0000
K2PG	13	-2612.2592	5250.5184	0.0000	1.0000
K2PI	13	-2612.5069	5251.0137	0.0000	1.0000
K2PIG	14	-2612.2799	5252.5598	0.0000	1.0000
SYMG	17	-2609.3595	5252.7189	0.0000	1.0000
SYMI	17	-2609.6248	5253.2497	0.0000	1.0000
SYMIG	18	-2609.3801	5254.7603	0.0000	1.0000
K2P	12	-2625.6875	5275.3750	0.0000	1.0000
SYM	16	-2622.0171	5276.0342	0.0000	1.0000
F81G	15	-2654.2802	5338.5605	0.0000	1.0000
F81I	15	-2654.5599	5339.1199	0.0000	1.0000
F81IG	16	-2654.2950	5340.5899	0.0000	1.0000
JC69G	12	-2668.6384	5361.2767	0.0000	1.0000
F81	14	-2666.7262	5361.4524	0.0000	1.0000
JC69I	12	-2668.9264	5361.8528	0.0000	1.0000
JC69IG	13	-2668.6586	5363.3171	0.0000	1.0000
JC69	11	-2681.1309	5384.2618	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2594.1905	5297.0045	0.5501	0.5501
HKYI	16	-2594.4372	5297.4978	0.4299	0.9800
HKYIG	17	-2594.2089	5303.8304	0.0181	0.9981
GTRG	20	-2587.0815	5309.9423	0.0009	0.9989
GTRI	20	-2587.3895	5310.5585	0.0006	0.9996
K2PG	13	-2612.2592	5312.7750	0.0002	0.9998
K2PI	13	-2612.5069	5313.2704	0.0002	0.9999
GTRIG	21	-2587.1018	5316.7720	0.0000	1.0000
HKY	15	-2607.7979	5317.4304	0.0000	1.0000
K2PIG	14	-2612.2799	5319.6054	0.0000	1.0000
GTR	19	-2600.5712	5330.1328	0.0000	1.0000
K2P	12	-2625.6875	5332.8427	0.0000	1.0000
SYMG	17	-2609.3595	5334.1314	0.0000	1.0000
SYMI	17	-2609.6248	5334.6622	0.0000	1.0000
SYMIG	18	-2609.3801	5340.9618	0.0000	1.0000
SYM	16	-2622.0171	5352.6578	0.0000	1.0000
F81G	15	-2654.2802	5410.3950	0.0000	1.0000
F81I	15	-2654.5599	5410.9545	0.0000	1.0000
F81IG	16	-2654.2950	5417.2135	0.0000	1.0000
JC69G	12	-2668.6384	5418.7444	0.0000	1.0000
JC69I	12	-2668.9264	5419.3205	0.0000	1.0000
JC69IG	13	-2668.6586	5425.5738	0.0000	1.0000
F81	14	-2666.7262	5428.4980	0.0000	1.0000
JC69	11	-2681.1309	5436.9405	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr1_22087.phylip = 1 - 888;
 Partition Dummy = 1:683-tomodel-phylip/chr1_22087.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr1_22087.phylip = 1 - 888;
 Partition Dummy = 1:683-tomodel-phylip/chr1_22087.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr1_22087.phylip = 1 - 888;
 Partition Dummy = 1:683-tomodel-phylip/chr1_22087.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

