
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:10 04/04/2011

Input data from file "683-tomodel-phylip/chr1_15372.phylip" (7 taxa, 1137 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3732.0082	7504.0163	0.5484	0.5484
GTRI	20	-3732.8024	7505.6048	0.2478	0.7962
GTRIG	21	-3732.0032	7506.0063	0.2027	0.9989
HKYG	16	-3742.9473	7517.8947	0.0005	0.9995
HKYI	16	-3743.4403	7518.8806	0.0003	0.9998
HKYIG	17	-3742.9060	7519.8120	0.0002	1.0000
SYMG	17	-3752.5053	7539.0105	0.0000	1.0000
GTR	19	-3751.0922	7540.1844	0.0000	1.0000
SYMI	17	-3753.2756	7540.5512	0.0000	1.0000
SYMIG	18	-3752.4949	7540.9899	0.0000	1.0000
K2PG	13	-3759.3187	7544.6374	0.0000	1.0000
K2PI	13	-3759.8846	7545.7691	0.0000	1.0000
K2PIG	14	-3759.2928	7546.5856	0.0000	1.0000
HKY	15	-3760.4902	7550.9804	0.0000	1.0000
SYM	16	-3769.9041	7571.8082	0.0000	1.0000
K2P	12	-3776.2964	7576.5927	0.0000	1.0000
F81G	15	-3810.0216	7650.0431	0.0000	1.0000
F81I	15	-3810.6118	7651.2235	0.0000	1.0000
F81IG	16	-3810.0145	7652.0289	0.0000	1.0000
JC69G	12	-3825.6276	7675.2552	0.0000	1.0000
JC69I	12	-3826.0698	7676.1396	0.0000	1.0000
JC69IG	13	-3825.6254	7677.2507	0.0000	1.0000
F81	14	-3824.7504	7677.5008	0.0000	1.0000
JC69	11	-3840.1047	7702.2093	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3742.9473	7598.4730	0.5844	0.5844
HKYI	16	-3743.4403	7599.4590	0.3570	0.9414
GTRG	20	-3732.0082	7604.7393	0.0255	0.9669
HKYIG	17	-3742.9060	7605.4265	0.0181	0.9849
GTRI	20	-3732.8024	7606.3278	0.0115	0.9965
K2PG	13	-3759.3187	7610.1074	0.0017	0.9982
K2PI	13	-3759.8846	7611.2390	0.0010	0.9992
GTRIG	21	-3732.0032	7611.7654	0.0008	0.9999
K2PIG	14	-3759.2928	7617.0917	0.0001	1.0000
SYMG	17	-3752.5053	7624.6250	0.0000	1.0000
SYMI	17	-3753.2756	7626.1657	0.0000	1.0000
HKY	15	-3760.4902	7626.5226	0.0000	1.0000
SYMIG	18	-3752.4949	7631.6406	0.0000	1.0000
GTR	19	-3751.0922	7635.8712	0.0000	1.0000
K2P	12	-3776.2964	7637.0265	0.0000	1.0000
SYM	16	-3769.9041	7652.3866	0.0000	1.0000
F81G	15	-3810.0216	7725.5853	0.0000	1.0000
F81I	15	-3810.6118	7726.7657	0.0000	1.0000
F81IG	16	-3810.0145	7732.6073	0.0000	1.0000
JC69G	12	-3825.6276	7735.6890	0.0000	1.0000
JC69I	12	-3826.0698	7736.5734	0.0000	1.0000
JC69IG	13	-3825.6254	7742.7207	0.0000	1.0000
F81	14	-3824.7504	7748.0069	0.0000	1.0000
JC69	11	-3840.1047	7757.6070	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr1_15372.phylip = 1 - 1137;
 Partition Dummy = 1:683-tomodel-phylip/chr1_15372.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr1_15372.phylip = 1 - 1137;
 Partition Dummy = 1:683-tomodel-phylip/chr1_15372.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr1_15372.phylip = 1 - 1137;
 Partition Dummy = 1:683-tomodel-phylip/chr1_15372.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

