
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:11 04/04/2011

Input data from file "683-tomodel-phylip/chr13_5324.phylip" (7 taxa, 1101 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2728.0875	5496.1750	0.6040	0.6040
GTRIG	21	-2727.9436	5497.8872	0.2566	0.8605
GTRI	20	-2729.5615	5499.1231	0.1383	0.9988
HKYG	16	-2738.9399	5509.8799	0.0006	0.9995
HKYI	16	-2739.7975	5511.5949	0.0003	0.9997
HKYIG	17	-2738.8262	5511.6524	0.0003	1.0000
GTR	19	-2756.7508	5551.5016	0.0000	1.0000
HKY	15	-2772.3716	5574.7433	0.0000	1.0000
F81G	15	-2790.1162	5610.2324	0.0000	1.0000
F81I	15	-2790.4665	5610.9330	0.0000	1.0000
F81IG	16	-2790.1222	5612.2444	0.0000	1.0000
K2PG	13	-2806.0574	5638.1149	0.0000	1.0000
K2PI	13	-2806.5740	5639.1481	0.0000	1.0000
K2PIG	14	-2805.9505	5639.9010	0.0000	1.0000
SYMG	17	-2803.6440	5641.2880	0.0000	1.0000
SYMI	17	-2804.1721	5642.3443	0.0000	1.0000
SYMIG	18	-2803.5631	5643.1261	0.0000	1.0000
F81	14	-2824.0473	5676.0946	0.0000	1.0000
SYM	16	-2841.4676	5714.9351	0.0000	1.0000
K2P	12	-2846.7187	5717.4374	0.0000	1.0000
JC69G	12	-2851.0739	5726.1477	0.0000	1.0000
JC69I	12	-2851.4117	5726.8234	0.0000	1.0000
JC69IG	13	-2851.0107	5728.0215	0.0000	1.0000
JC69	11	-2888.8739	5799.7479	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2738.9399	5589.9434	0.6614	0.6614
HKYI	16	-2739.7975	5591.6585	0.2806	0.9420
GTRG	20	-2728.0875	5596.2544	0.0282	0.9702
HKYIG	17	-2738.8262	5596.7200	0.0223	0.9926
GTRI	20	-2729.5615	5599.2025	0.0065	0.9990
GTRIG	21	-2727.9436	5602.9707	0.0010	1.0000
GTR	19	-2756.7508	5646.5771	0.0000	1.0000
HKY	15	-2772.3716	5649.8029	0.0000	1.0000
F81G	15	-2790.1162	5685.2920	0.0000	1.0000
F81I	15	-2790.4665	5685.9927	0.0000	1.0000
F81IG	16	-2790.1222	5692.3080	0.0000	1.0000
K2PG	13	-2806.0574	5703.1665	0.0000	1.0000
K2PI	13	-2806.5740	5704.1997	0.0000	1.0000
K2PIG	14	-2805.9505	5709.9567	0.0000	1.0000
SYMG	17	-2803.6440	5726.3555	0.0000	1.0000
SYMI	17	-2804.1721	5727.4118	0.0000	1.0000
SYMIG	18	-2803.5631	5733.1976	0.0000	1.0000
F81	14	-2824.0473	5746.1503	0.0000	1.0000
K2P	12	-2846.7187	5777.4851	0.0000	1.0000
JC69G	12	-2851.0739	5786.1954	0.0000	1.0000
JC69I	12	-2851.4117	5786.8711	0.0000	1.0000
JC69IG	13	-2851.0107	5793.0731	0.0000	1.0000
SYM	16	-2841.4676	5794.9987	0.0000	1.0000
JC69	11	-2888.8739	5854.7916	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr13_5324.phylip = 1 - 1101;
 Partition Dummy = 1:683-tomodel-phylip/chr13_5324.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr13_5324.phylip = 1 - 1101;
 Partition Dummy = 1:683-tomodel-phylip/chr13_5324.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr13_5324.phylip = 1 - 1101;
 Partition Dummy = 1:683-tomodel-phylip/chr13_5324.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

