
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
16:12 04/04/2011

Input data from file "683-tomodel-phylip/chr12_5878.phylip" (7 taxa, 952 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3259.4877	6558.9753	0.6792	0.6792
GTRIG	21	-3259.3589	6560.7178	0.2842	0.9634
GTRI	20	-3262.7410	6565.4820	0.0262	0.9897
SYMG	17	-3267.0465	6568.0929	0.0071	0.9968
SYMIG	18	-3266.9270	6569.8540	0.0029	0.9997
SYMI	17	-3270.3670	6574.7340	0.0003	1.0000
HKYG	16	-3275.2892	6582.5785	0.0000	1.0000
K2PG	13	-3278.9374	6583.8749	0.0000	1.0000
HKYIG	17	-3275.1935	6584.3869	0.0000	1.0000
K2PIG	14	-3278.8438	6585.6875	0.0000	1.0000
HKYI	16	-3279.1725	6590.3450	0.0000	1.0000
K2PI	13	-3282.8254	6591.6508	0.0000	1.0000
GTR	19	-3317.1694	6672.3387	0.0000	1.0000
SYM	16	-3321.5947	6675.1894	0.0000	1.0000
K2P	12	-3331.1162	6686.2325	0.0000	1.0000
HKY	15	-3328.2475	6686.4951	0.0000	1.0000
JC69G	12	-3364.9853	6753.9707	0.0000	1.0000
F81G	15	-3362.9666	6755.9332	0.0000	1.0000
JC69IG	13	-3365.0048	6756.0095	0.0000	1.0000
JC69I	12	-3366.8444	6757.6888	0.0000	1.0000
F81IG	16	-3363.0013	6758.0027	0.0000	1.0000
F81I	15	-3364.7588	6759.5176	0.0000	1.0000
JC69	11	-3411.9253	6845.8507	0.0000	1.0000
F81	14	-3409.8214	6847.6428	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-3278.9374	6647.0362	0.8055	0.8055
SYMG	17	-3267.0465	6650.6885	0.1297	0.9352
K2PIG	14	-3278.8438	6653.7074	0.0287	0.9639
K2PI	13	-3282.8254	6654.8121	0.0165	0.9804
GTRG	20	-3259.4877	6656.1466	0.0085	0.9888
SYMIG	18	-3266.9270	6657.3082	0.0047	0.9936
SYMI	17	-3270.3670	6657.3296	0.0047	0.9982
HKYG	16	-3275.2892	6660.3155	0.0011	0.9993
GTRI	20	-3262.7410	6662.6533	0.0003	0.9996
GTRIG	21	-3259.3589	6662.7477	0.0003	0.9999
HKYIG	17	-3275.1935	6666.9825	0.0000	1.0000
HKYI	16	-3279.1725	6668.0820	0.0000	1.0000
K2P	12	-3331.1162	6744.5352	0.0000	1.0000
SYM	16	-3321.5947	6752.9264	0.0000	1.0000
HKY	15	-3328.2475	6759.3736	0.0000	1.0000
GTR	19	-3317.1694	6764.6514	0.0000	1.0000
JC69G	12	-3364.9853	6812.2735	0.0000	1.0000
JC69I	12	-3366.8444	6815.9916	0.0000	1.0000
JC69IG	13	-3365.0048	6819.1708	0.0000	1.0000
F81G	15	-3362.9666	6828.8117	0.0000	1.0000
F81I	15	-3364.7588	6832.3961	0.0000	1.0000
F81IG	16	-3363.0013	6835.7397	0.0000	1.0000
JC69	11	-3411.9253	6899.2949	0.0000	1.0000
F81	14	-3409.8214	6915.6627	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr12_5878.phylip = 1 - 952;
 Partition Dummy = 1:683-tomodel-phylip/chr12_5878.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr12_5878.phylip = 1 - 952;
 Partition Dummy = 1:683-tomodel-phylip/chr12_5878.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr12_5878.phylip = 1 - 952;
 Partition Dummy = 1:683-tomodel-phylip/chr12_5878.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

