
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:10 04/04/2011

Input data from file "683-tomodel-phylip/chr11_4789.phylip" (7 taxa, 789 characters)

Minimum AIC  model: GTRI
Minimum AICc model: GTRI
Minimum BIC  model: HKYI


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRI	20	-2209.0135	4459.1208	0.3459	0.3459
GTRG	20	-2209.4027	4459.8991	0.2344	0.5803
HKYI	16	-2214.1809	4461.0666	0.1307	0.7110
HKYG	16	-2214.2242	4461.1530	0.1252	0.8362
GTRIG	21	-2209.0163	4461.2374	0.1200	0.9563
HKYIG	17	-2214.2315	4463.2568	0.0437	1.0000
GTR	19	-2222.7389	4484.4661	0.0000	1.0000
HKY	15	-2227.0752	4484.7715	0.0000	1.0000
K2PG	13	-2242.0092	4510.4880	0.0000	1.0000
K2PI	13	-2242.2502	4510.9701	0.0000	1.0000
K2PIG	14	-2242.0274	4512.5975	0.0000	1.0000
SYMG	17	-2240.9783	4516.7503	0.0000	1.0000
SYMI	17	-2241.1186	4517.0309	0.0000	1.0000
SYMIG	18	-2241.0017	4518.8917	0.0000	1.0000
K2P	12	-2255.7647	4535.9315	0.0000	1.0000
SYM	16	-2254.7884	4542.2815	0.0000	1.0000
F81I	15	-2262.4533	4555.5276	0.0000	1.0000
F81G	15	-2262.4893	4555.5996	0.0000	1.0000
F81IG	16	-2262.5047	4557.7140	0.0000	1.0000
F81	14	-2274.6184	4577.7794	0.0000	1.0000
JC69G	12	-2286.0574	4596.5169	0.0000	1.0000
JC69I	12	-2286.1729	4596.7478	0.0000	1.0000
JC69IG	13	-2286.0802	4598.6300	0.0000	1.0000
JC69	11	-2298.7493	4619.8384	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRI	20	-2209.0135	4458.0270	0.3620	0.3620
GTRG	20	-2209.4027	4458.8054	0.2453	0.6073
GTRIG	21	-2209.0163	4460.0327	0.1328	0.7401
HKYI	16	-2214.1809	4460.3619	0.1126	0.8527
HKYG	16	-2214.2242	4460.4483	0.1079	0.9606
HKYIG	17	-2214.2315	4462.4630	0.0394	1.0000
GTR	19	-2222.7389	4483.4778	0.0000	1.0000
HKY	15	-2227.0752	4484.1505	0.0000	1.0000
K2PG	13	-2242.0092	4510.0183	0.0000	1.0000
K2PI	13	-2242.2502	4510.5004	0.0000	1.0000
K2PIG	14	-2242.0274	4512.0548	0.0000	1.0000
SYMG	17	-2240.9783	4515.9566	0.0000	1.0000
SYMI	17	-2241.1186	4516.2371	0.0000	1.0000
SYMIG	18	-2241.0017	4518.0034	0.0000	1.0000
K2P	12	-2255.7647	4535.5295	0.0000	1.0000
SYM	16	-2254.7884	4541.5768	0.0000	1.0000
F81I	15	-2262.4533	4554.9066	0.0000	1.0000
F81G	15	-2262.4893	4554.9787	0.0000	1.0000
F81IG	16	-2262.5047	4557.0094	0.0000	1.0000
F81	14	-2274.6184	4577.2368	0.0000	1.0000
JC69G	12	-2286.0574	4596.1149	0.0000	1.0000
JC69I	12	-2286.1729	4596.3458	0.0000	1.0000
JC69IG	13	-2286.0802	4598.1603	0.0000	1.0000
JC69	11	-2298.7493	4619.4986	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-2214.1809	4535.0942	0.5020	0.5020
HKYG	16	-2214.2242	4535.1806	0.4808	0.9827
HKYIG	17	-2214.2315	4541.8661	0.0170	0.9997
GTRI	20	-2209.0135	4551.4424	0.0001	0.9999
GTRG	20	-2209.4027	4552.2207	0.0001	1.0000
HKY	15	-2227.0752	4554.2120	0.0000	1.0000
GTRIG	21	-2209.0163	4558.1188	0.0000	1.0000
K2PG	13	-2242.0092	4570.7383	0.0000	1.0000
K2PI	13	-2242.2502	4571.2204	0.0000	1.0000
GTR	19	-2222.7389	4572.2223	0.0000	1.0000
K2PIG	14	-2242.0274	4577.4456	0.0000	1.0000
K2P	12	-2255.7647	4591.5787	0.0000	1.0000
SYMG	17	-2240.9783	4595.3596	0.0000	1.0000
SYMI	17	-2241.1186	4595.6402	0.0000	1.0000
SYMIG	18	-2241.0017	4602.0772	0.0000	1.0000
SYM	16	-2254.7884	4616.3091	0.0000	1.0000
F81I	15	-2262.4533	4624.9681	0.0000	1.0000
F81G	15	-2262.4893	4625.0402	0.0000	1.0000
F81IG	16	-2262.5047	4631.7416	0.0000	1.0000
F81	14	-2274.6184	4642.6275	0.0000	1.0000
JC69G	12	-2286.0574	4652.1641	0.0000	1.0000
JC69I	12	-2286.1729	4652.3950	0.0000	1.0000
JC69IG	13	-2286.0802	4658.8803	0.0000	1.0000
JC69	11	-2298.7493	4670.8770	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRI)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr11_4789.phylip = 1 - 789;
 Partition Dummy = 1:683-tomodel-phylip/chr11_4789.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRI)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr11_4789.phylip = 1 - 789;
 Partition Dummy = 1:683-tomodel-phylip/chr11_4789.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr11_4789.phylip = 1 - 789;
 Partition Dummy = 1:683-tomodel-phylip/chr11_4789.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

