
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:09 04/04/2011

Input data from file "683-tomodel-phylip/chr11_1549.phylip" (7 taxa, 922 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3170.1413	6380.2827	0.6919	0.6919
GTRIG	21	-3170.1413	6382.2826	0.2545	0.9464
GTRI	20	-3172.9153	6385.8305	0.0432	0.9896
HKYG	16	-3178.7091	6389.4181	0.0072	0.9968
HKYIG	17	-3178.7107	6391.4213	0.0026	0.9994
HKYI	16	-3181.2713	6394.5426	0.0006	1.0000
GTR	19	-3189.5773	6417.1545	0.0000	1.0000
HKY	15	-3196.7761	6423.5522	0.0000	1.0000
K2PG	13	-3215.0154	6456.0308	0.0000	1.0000
SYMG	17	-3211.7553	6457.5106	0.0000	1.0000
K2PIG	14	-3215.0173	6458.0346	0.0000	1.0000
SYMIG	18	-3211.7578	6459.5157	0.0000	1.0000
K2PI	13	-3217.0467	6460.0935	0.0000	1.0000
SYMI	17	-3213.7035	6461.4071	0.0000	1.0000
K2P	12	-3232.3844	6488.7688	0.0000	1.0000
SYM	16	-3229.0611	6490.1221	0.0000	1.0000
F81G	15	-3280.1496	6590.2993	0.0000	1.0000
F81IG	16	-3280.1497	6592.2994	0.0000	1.0000
F81I	15	-3281.8499	6593.6998	0.0000	1.0000
F81	14	-3294.4030	6616.8060	0.0000	1.0000
JC69G	12	-3308.1632	6640.3263	0.0000	1.0000
JC69IG	13	-3308.1639	6642.3277	0.0000	1.0000
JC69I	12	-3309.7342	6643.4684	0.0000	1.0000
JC69	11	-3322.3370	6666.6739	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3178.7091	6466.6428	0.8954	0.8954
HKYI	16	-3181.2713	6471.7673	0.0691	0.9645
HKYIG	17	-3178.7107	6473.4726	0.0294	0.9939
GTRG	20	-3170.1413	6476.8136	0.0055	0.9995
GTRI	20	-3172.9153	6482.3614	0.0003	0.9998
GTRIG	21	-3170.1413	6483.6401	0.0002	1.0000
HKY	15	-3196.7761	6495.9504	0.0000	1.0000
GTR	19	-3189.5773	6508.8589	0.0000	1.0000
K2PG	13	-3215.0154	6518.7759	0.0000	1.0000
K2PI	13	-3217.0467	6522.8385	0.0000	1.0000
K2PIG	14	-3215.0173	6525.6062	0.0000	1.0000
SYMG	17	-3211.7553	6539.5619	0.0000	1.0000
SYMI	17	-3213.7035	6543.4583	0.0000	1.0000
SYMIG	18	-3211.7578	6546.3935	0.0000	1.0000
K2P	12	-3232.3844	6546.6873	0.0000	1.0000
SYM	16	-3229.0611	6567.3468	0.0000	1.0000
F81G	15	-3280.1496	6662.6975	0.0000	1.0000
F81I	15	-3281.8499	6666.0979	0.0000	1.0000
F81IG	16	-3280.1497	6669.5241	0.0000	1.0000
F81	14	-3294.4030	6684.3776	0.0000	1.0000
JC69G	12	-3308.1632	6698.2449	0.0000	1.0000
JC69I	12	-3309.7342	6701.3870	0.0000	1.0000
JC69IG	13	-3308.1639	6705.0728	0.0000	1.0000
JC69	11	-3322.3370	6719.7659	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr11_1549.phylip = 1 - 922;
 Partition Dummy = 1:683-tomodel-phylip/chr11_1549.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr11_1549.phylip = 1 - 922;
 Partition Dummy = 1:683-tomodel-phylip/chr11_1549.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr11_1549.phylip = 1 - 922;
 Partition Dummy = 1:683-tomodel-phylip/chr11_1549.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

