
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
12:54 02/24/2011

Input data from file "/Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr7_10793.phylip" (19 taxa, 582 characters)

Minimum AIC  model: HKYIG
Minimum AICc model: HKYIG
Minimum BIC  model: HKYIG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYIG	41	-1740.8031	3569.9839	0.6720	0.6720
GTRIG	45	-1737.4906	3572.7052	0.1724	0.8444
HKYG	40	-1744.1812	3574.4252	0.0729	0.9173
HKYI	40	-1744.5945	3575.2517	0.0482	0.9656
GTRG	44	-1740.6393	3576.6529	0.0239	0.9895
GTRI	44	-1741.4735	3578.3213	0.0104	0.9999
SYMIG	42	-1749.2722	3589.2458	0.0000	1.0000
K2PIG	38	-1754.8598	3591.1781	0.0000	1.0000
SYMG	41	-1752.4063	3593.1903	0.0000	1.0000
SYMI	41	-1753.0678	3594.5134	0.0000	1.0000
K2PG	37	-1757.8739	3594.9170	0.0000	1.0000
K2PI	37	-1758.1106	3595.3902	0.0000	1.0000
F81IG	40	-1787.0702	3660.2032	0.0000	1.0000
F81G	39	-1788.8461	3661.4486	0.0000	1.0000
F81I	39	-1791.0215	3665.7994	0.0000	1.0000
JC69G	36	-1809.2216	3695.3313	0.0000	1.0000
JC69I	36	-1809.6204	3696.1289	0.0000	1.0000
JC69IG	37	-1808.9716	3697.1123	0.0000	1.0000
GTR	43	-1810.1943	3713.4221	0.0000	1.0000
HKY	39	-1817.4299	3718.6162	0.0000	1.0000
SYM	40	-1821.4763	3729.0155	0.0000	1.0000
K2P	36	-1828.4591	3733.8064	0.0000	1.0000
F81	38	-1857.7443	3796.9471	0.0000	1.0000
JC69	35	-1875.8429	3826.3011	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYIG	41	-1740.8031	3563.6061	0.5744	0.5744
GTRIG	45	-1737.4906	3564.9813	0.2888	0.8631
HKYG	40	-1744.1812	3568.3624	0.0533	0.9164
HKYI	40	-1744.5945	3569.1889	0.0352	0.9516
GTRG	44	-1740.6393	3569.2786	0.0337	0.9853
GTRI	44	-1741.4735	3570.9470	0.0146	0.9999
SYMIG	42	-1749.2722	3582.5445	0.0000	1.0000
K2PIG	38	-1754.8598	3585.7195	0.0000	1.0000
SYMG	41	-1752.4063	3586.8125	0.0000	1.0000
SYMI	41	-1753.0678	3588.1356	0.0000	1.0000
K2PG	37	-1757.8739	3589.7479	0.0000	1.0000
K2PI	37	-1758.1106	3590.2211	0.0000	1.0000
F81IG	40	-1787.0702	3654.1403	0.0000	1.0000
F81G	39	-1788.8461	3655.6921	0.0000	1.0000
F81I	39	-1791.0215	3660.0430	0.0000	1.0000
JC69G	36	-1809.2216	3690.4432	0.0000	1.0000
JC69I	36	-1809.6204	3691.2408	0.0000	1.0000
JC69IG	37	-1808.9716	3691.9432	0.0000	1.0000
GTR	43	-1810.1943	3706.3886	0.0000	1.0000
HKY	39	-1817.4299	3712.8597	0.0000	1.0000
SYM	40	-1821.4763	3722.9527	0.0000	1.0000
K2P	36	-1828.4591	3728.9183	0.0000	1.0000
F81	38	-1857.7443	3791.4886	0.0000	1.0000
JC69	35	-1875.8429	3821.6857	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYIG	41	-1740.8031	3742.6314	0.4163	0.4163
HKYG	40	-1744.1812	3743.0212	0.3426	0.7589
HKYI	40	-1744.5945	3743.8477	0.2266	0.9856
K2PG	37	-1757.8739	3751.3073	0.0054	0.9910
K2PIG	38	-1754.8598	3751.6454	0.0046	0.9956
K2PI	37	-1758.1106	3751.7805	0.0043	0.9999
GTRG	44	-1740.6393	3761.4033	0.0000	0.9999
GTRIG	45	-1737.4906	3761.4725	0.0000	1.0000
GTRI	44	-1741.4735	3763.0717	0.0000	1.0000
SYMG	41	-1752.4063	3765.8378	0.0000	1.0000
SYMIG	42	-1749.2722	3765.9362	0.0000	1.0000
SYMI	41	-1753.0678	3767.1609	0.0000	1.0000
F81G	39	-1788.8461	3825.9844	0.0000	1.0000
F81IG	40	-1787.0702	3828.7991	0.0000	1.0000
F81I	39	-1791.0215	3830.3353	0.0000	1.0000
JC69G	36	-1809.2216	3847.6361	0.0000	1.0000
JC69I	36	-1809.6204	3848.4338	0.0000	1.0000
JC69IG	37	-1808.9716	3853.5026	0.0000	1.0000
HKY	39	-1817.4299	3883.1521	0.0000	1.0000
K2P	36	-1828.4591	3886.1112	0.0000	1.0000
GTR	43	-1810.1943	3894.1468	0.0000	1.0000
SYM	40	-1821.4763	3897.6115	0.0000	1.0000
F81	38	-1857.7443	3957.4145	0.0000	1.0000
JC69	35	-1875.8429	3974.5122	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYIG)]

BEGIN MRBAYES;
 Charset /Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr7_10793.phylip = 1 - 582;
 Partition Dummy = 1:/Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr7_10793.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=invgamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (HKYIG)]

BEGIN MRBAYES;
 Charset /Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr7_10793.phylip = 1 - 582;
 Partition Dummy = 1:/Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr7_10793.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=invgamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYIG)]

BEGIN MRBAYES;
 Charset /Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr7_10793.phylip = 1 - 582;
 Partition Dummy = 1:/Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr7_10793.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=invgamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

