
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
12:41 02/24/2011

Input data from file "/Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr6_9746.phylip" (19 taxa, 864 characters)

Minimum AIC  model: GTRIG
Minimum AICc model: GTRIG
Minimum BIC  model: GTRG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRIG	45	-2200.7309	4496.5229	0.7507	0.7507
GTRG	44	-2203.3073	4499.4498	0.1737	0.9244
GTRI	44	-2204.1399	4501.1150	0.0756	1.0000
HKYIG	41	-2222.4771	4531.1440	0.0000	1.0000
HKYG	40	-2223.7711	4531.5277	0.0000	1.0000
HKYI	40	-2224.0840	4532.1535	0.0000	1.0000
SYMIG	42	-2241.0860	4570.5715	0.0000	1.0000
SYMG	41	-2242.3665	4570.9228	0.0000	1.0000
SYMI	41	-2242.6965	4571.5827	0.0000	1.0000
K2PIG	38	-2252.2189	4584.0304	0.0000	1.0000
K2PG	37	-2253.5132	4584.4308	0.0000	1.0000
K2PI	37	-2253.7650	4584.9344	0.0000	1.0000
GTR	43	-2250.4279	4591.4705	0.0000	1.0000
HKY	39	-2267.4890	4616.7644	0.0000	1.0000
F81G	39	-2271.2573	4624.3011	0.0000	1.0000
F81IG	40	-2270.3097	4624.6049	0.0000	1.0000
F81I	39	-2271.5147	4624.8158	0.0000	1.0000
SYM	40	-2286.0882	4656.1618	0.0000	1.0000
JC69G	36	-2296.4195	4668.0603	0.0000	1.0000
JC69IG	37	-2295.5123	4668.4289	0.0000	1.0000
JC69I	36	-2296.6515	4668.5243	0.0000	1.0000
K2P	36	-2297.0488	4669.3188	0.0000	1.0000
F81	38	-2313.9915	4707.5756	0.0000	1.0000
JC69	35	-2339.1686	4751.3806	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRIG	45	-2200.7309	4491.4618	0.7712	0.7712
GTRG	44	-2203.3073	4494.6146	0.1594	0.9307
GTRI	44	-2204.1399	4496.2799	0.0693	1.0000
HKYIG	41	-2222.4771	4526.9543	0.0000	1.0000
HKYG	40	-2223.7711	4527.5422	0.0000	1.0000
HKYI	40	-2224.0840	4528.1680	0.0000	1.0000
SYMIG	42	-2241.0860	4566.1720	0.0000	1.0000
SYMG	41	-2242.3665	4566.7330	0.0000	1.0000
SYMI	41	-2242.6965	4567.3930	0.0000	1.0000
K2PIG	38	-2252.2189	4580.4377	0.0000	1.0000
K2PG	37	-2253.5132	4581.0264	0.0000	1.0000
K2PI	37	-2253.7650	4581.5300	0.0000	1.0000
GTR	43	-2250.4279	4586.8558	0.0000	1.0000
HKY	39	-2267.4890	4612.9780	0.0000	1.0000
F81G	39	-2271.2573	4620.5147	0.0000	1.0000
F81IG	40	-2270.3097	4620.6195	0.0000	1.0000
F81I	39	-2271.5147	4621.0294	0.0000	1.0000
SYM	40	-2286.0882	4652.1764	0.0000	1.0000
JC69G	36	-2296.4195	4664.8391	0.0000	1.0000
JC69IG	37	-2295.5123	4665.0246	0.0000	1.0000
JC69I	36	-2296.6515	4665.3030	0.0000	1.0000
K2P	36	-2297.0488	4666.0975	0.0000	1.0000
F81	38	-2313.9915	4703.9829	0.0000	1.0000
JC69	35	-2339.1686	4748.3372	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	44	-2203.3073	4704.1238	0.5308	0.5308
GTRIG	45	-2200.7309	4705.7326	0.2374	0.7682
GTRI	44	-2204.1399	4705.7891	0.2308	0.9990
HKYG	40	-2223.7711	4718.0052	0.0005	0.9996
HKYI	40	-2224.0840	4718.6310	0.0004	0.9999
HKYIG	41	-2222.4771	4722.1787	0.0001	1.0000
K2PG	37	-2253.5132	4757.2046	0.0000	1.0000
K2PI	37	-2253.7650	4757.7082	0.0000	1.0000
K2PIG	38	-2252.2189	4761.3775	0.0000	1.0000
SYMG	41	-2242.3665	4761.9575	0.0000	1.0000
SYMI	41	-2242.6965	4762.6174	0.0000	1.0000
SYMIG	42	-2241.0860	4766.1580	0.0000	1.0000
GTR	43	-2250.4279	4791.6035	0.0000	1.0000
HKY	39	-2267.4890	4798.6793	0.0000	1.0000
F81G	39	-2271.2573	4806.2160	0.0000	1.0000
F81I	39	-2271.5147	4806.7308	0.0000	1.0000
F81IG	40	-2270.3097	4811.0824	0.0000	1.0000
JC69G	36	-2296.4195	4836.2557	0.0000	1.0000
JC69I	36	-2296.6515	4836.7196	0.0000	1.0000
K2P	36	-2297.0488	4837.5141	0.0000	1.0000
JC69IG	37	-2295.5123	4841.2028	0.0000	1.0000
SYM	40	-2286.0882	4842.6393	0.0000	1.0000
F81	38	-2313.9915	4884.9227	0.0000	1.0000
JC69	35	-2339.1686	4914.9922	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRIG)]

BEGIN MRBAYES;
 Charset /Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr6_9746.phylip = 1 - 864;
 Partition Dummy = 1:/Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr6_9746.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=invgamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRIG)]

BEGIN MRBAYES;
 Charset /Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr6_9746.phylip = 1 - 864;
 Partition Dummy = 1:/Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr6_9746.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=invgamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset /Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr6_9746.phylip = 1 - 864;
 Partition Dummy = 1:/Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr6_9746.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

