
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
11:55 02/24/2011

Input data from file "/Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr2_23281.phylip" (19 taxa, 868 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	44	-4542.9565	9178.7247	0.7464	0.7464
GTRIG	45	-4542.9235	9180.8836	0.2536	1.0000
HKYG	40	-4564.6055	9213.1770	0.0000	1.0000
HKYIG	41	-4564.4675	9215.1044	0.0000	1.0000
SYMG	41	-4567.9839	9222.1373	0.0000	1.0000
SYMIG	42	-4567.8813	9224.1408	0.0000	1.0000
K2PG	37	-4575.8320	9229.0520	0.0000	1.0000
K2PIG	38	-4575.6909	9230.9572	0.0000	1.0000
GTRI	44	-4580.8650	9254.5417	0.0000	1.0000
HKYI	40	-4598.5805	9281.1272	0.0000	1.0000
SYMI	41	-4602.0909	9290.3512	0.0000	1.0000
K2PI	37	-4609.2567	9295.9013	0.0000	1.0000
F81G	39	-4676.4005	9434.5690	0.0000	1.0000
F81IG	40	-4676.2792	9436.5246	0.0000	1.0000
JC69G	36	-4681.3697	9437.9451	0.0000	1.0000
JC69IG	37	-4681.2526	9439.8931	0.0000	1.0000
GTR	43	-4680.2538	9451.0998	0.0000	1.0000
HKY	39	-4696.9229	9475.6139	0.0000	1.0000
SYM	40	-4699.3322	9482.6306	0.0000	1.0000
K2P	36	-4707.2473	9489.7004	0.0000	1.0000
F81I	39	-4704.9155	9491.5992	0.0000	1.0000
JC69I	36	-4709.9691	9495.1440	0.0000	1.0000
F81	38	-4798.9205	9677.4165	0.0000	1.0000
JC69	35	-4803.8239	9680.6766	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	44	-4542.9565	9173.9131	0.7245	0.7245
GTRIG	45	-4542.9235	9175.8471	0.2755	1.0000
HKYG	40	-4564.6055	9209.2109	0.0000	1.0000
HKYIG	41	-4564.4675	9210.9349	0.0000	1.0000
SYMG	41	-4567.9839	9217.9678	0.0000	1.0000
SYMIG	42	-4567.8813	9219.7626	0.0000	1.0000
K2PG	37	-4575.8320	9225.6640	0.0000	1.0000
K2PIG	38	-4575.6909	9227.3818	0.0000	1.0000
GTRI	44	-4580.8650	9249.7300	0.0000	1.0000
HKYI	40	-4598.5805	9277.1610	0.0000	1.0000
SYMI	41	-4602.0909	9286.1817	0.0000	1.0000
K2PI	37	-4609.2567	9292.5133	0.0000	1.0000
F81G	39	-4676.4005	9430.8009	0.0000	1.0000
F81IG	40	-4676.2792	9432.5584	0.0000	1.0000
JC69G	36	-4681.3697	9434.7393	0.0000	1.0000
JC69IG	37	-4681.2526	9436.5051	0.0000	1.0000
GTR	43	-4680.2538	9446.5076	0.0000	1.0000
HKY	39	-4696.9229	9471.8458	0.0000	1.0000
SYM	40	-4699.3322	9478.6644	0.0000	1.0000
K2P	36	-4707.2473	9486.4946	0.0000	1.0000
F81I	39	-4704.9155	9487.8311	0.0000	1.0000
JC69I	36	-4709.9691	9491.9382	0.0000	1.0000
F81	38	-4798.9205	9673.8411	0.0000	1.0000
JC69	35	-4803.8239	9677.6478	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	44	-4542.9565	9383.6255	0.9657	0.9657
GTRIG	45	-4542.9235	9390.3257	0.0339	0.9996
HKYG	40	-4564.6055	9399.8586	0.0003	0.9999
K2PG	37	-4575.8320	9402.0131	0.0001	1.0000
HKYIG	41	-4564.4675	9406.3488	0.0000	1.0000
K2PIG	38	-4575.6909	9408.4971	0.0000	1.0000
SYMG	41	-4567.9839	9413.3816	0.0000	1.0000
SYMIG	42	-4567.8813	9419.9427	0.0000	1.0000
GTRI	44	-4580.8650	9459.4425	0.0000	1.0000
HKYI	40	-4598.5805	9467.8087	0.0000	1.0000
K2PI	37	-4609.2567	9468.8624	0.0000	1.0000
SYMI	41	-4602.0909	9481.5956	0.0000	1.0000
JC69G	36	-4681.3697	9606.3222	0.0000	1.0000
JC69IG	37	-4681.2526	9612.8542	0.0000	1.0000
F81G	39	-4676.4005	9616.6824	0.0000	1.0000
F81IG	40	-4676.2792	9623.2061	0.0000	1.0000
GTR	43	-4680.2538	9651.4538	0.0000	1.0000
HKY	39	-4696.9229	9657.7273	0.0000	1.0000
K2P	36	-4707.2473	9658.0775	0.0000	1.0000
JC69I	36	-4709.9691	9663.5211	0.0000	1.0000
SYM	40	-4699.3322	9669.3121	0.0000	1.0000
F81I	39	-4704.9155	9673.7125	0.0000	1.0000
JC69	35	-4803.8239	9844.4645	0.0000	1.0000
F81	38	-4798.9205	9854.9564	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset /Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr2_23281.phylip = 1 - 868;
 Partition Dummy = 1:/Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr2_23281.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset /Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr2_23281.phylip = 1 - 868;
 Partition Dummy = 1:/Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr2_23281.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset /Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr2_23281.phylip = 1 - 868;
 Partition Dummy = 1:/Users/bcf/Git/brant/seqcap/Manuscripts/Tetrapods/Nature/Data/917Loci_19Species/alignments_from_loci/917Loci_19Species_alignments_phylip/chr2_23281.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

