
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:56 04/04/2011

Input data from file "591-tomodel-phylip/chrZ_8113.phylip" (7 taxa, 1010 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2549.4517	5138.9034	0.5266	0.5266
GTRIG	21	-2548.8743	5139.7486	0.3451	0.8717
GTRI	20	-2550.9875	5141.9750	0.1134	0.9851
HKYG	16	-2557.6513	5147.3026	0.0079	0.9930
HKYIG	17	-2557.1056	5148.2111	0.0050	0.9980
HKYI	16	-2559.0189	5150.0378	0.0020	1.0000
GTR	19	-2577.3293	5192.6586	0.0000	1.0000
HKY	15	-2585.1352	5200.2704	0.0000	1.0000
K2PG	13	-2595.7344	5217.4687	0.0000	1.0000
K2PIG	14	-2595.0566	5218.1133	0.0000	1.0000
SYMG	17	-2592.5618	5219.1236	0.0000	1.0000
SYMIG	18	-2591.7840	5219.5680	0.0000	1.0000
K2PI	13	-2597.1190	5220.2379	0.0000	1.0000
SYMI	17	-2594.0880	5222.1761	0.0000	1.0000
F81G	15	-2601.2766	5232.5532	0.0000	1.0000
F81IG	16	-2600.8593	5233.7186	0.0000	1.0000
F81I	15	-2602.4212	5234.8424	0.0000	1.0000
K2P	12	-2624.1809	5272.3617	0.0000	1.0000
SYM	16	-2621.1191	5274.2383	0.0000	1.0000
F81	14	-2627.4259	5282.8519	0.0000	1.0000
JC69G	12	-2635.2167	5294.4335	0.0000	1.0000
JC69IG	13	-2634.7476	5295.4951	0.0000	1.0000
JC69I	12	-2636.3804	5296.7609	0.0000	1.0000
JC69	11	-2662.0051	5346.0101	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2557.6513	5225.9858	0.7613	0.7613
HKYI	16	-2559.0189	5228.7211	0.1939	0.9552
HKYIG	17	-2557.1056	5231.8121	0.0413	0.9965
GTRG	20	-2549.4517	5237.2575	0.0027	0.9993
GTRI	20	-2550.9875	5240.3291	0.0006	0.9998
GTRIG	21	-2548.8743	5243.0204	0.0002	1.0000
HKY	15	-2585.1352	5274.0360	0.0000	1.0000
K2PG	13	-2595.7344	5281.3989	0.0000	1.0000
K2PI	13	-2597.1190	5284.1681	0.0000	1.0000
GTR	19	-2577.3293	5286.0950	0.0000	1.0000
K2PIG	14	-2595.0566	5286.9612	0.0000	1.0000
SYMG	17	-2592.5618	5302.7246	0.0000	1.0000
SYMI	17	-2594.0880	5305.7771	0.0000	1.0000
F81G	15	-2601.2766	5306.3188	0.0000	1.0000
SYMIG	18	-2591.7840	5308.0867	0.0000	1.0000
F81I	15	-2602.4212	5308.6080	0.0000	1.0000
F81IG	16	-2600.8593	5312.4018	0.0000	1.0000
K2P	12	-2624.1809	5331.3742	0.0000	1.0000
F81	14	-2627.4259	5351.6997	0.0000	1.0000
SYM	16	-2621.1191	5352.9215	0.0000	1.0000
JC69G	12	-2635.2167	5353.4459	0.0000	1.0000
JC69I	12	-2636.3804	5355.7733	0.0000	1.0000
JC69IG	13	-2634.7476	5359.4253	0.0000	1.0000
JC69	11	-2662.0051	5400.1049	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_8113.phylip = 1 - 1010;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_8113.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_8113.phylip = 1 - 1010;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_8113.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_8113.phylip = 1 - 1010;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_8113.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

