
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:56 04/04/2011

Input data from file "591-tomodel-phylip/chrZ_8050.phylip" (7 taxa, 576 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2092.6404	4226.7944	0.5691	0.5691
GTRIG	21	-2092.6162	4228.9002	0.1986	0.7677
GTRI	20	-2093.6942	4228.9019	0.1984	0.9662
HKYG	16	-2100.2003	4233.3737	0.0212	0.9874
HKYIG	17	-2100.1984	4235.4937	0.0073	0.9947
HKYI	16	-2101.5908	4236.1548	0.0053	1.0000
GTR	19	-2106.2186	4251.8040	0.0000	1.0000
K2PG	13	-2114.8401	4256.3279	0.0000	1.0000
K2PIG	14	-2114.8431	4258.4349	0.0000	1.0000
SYMG	17	-2112.1974	4259.4916	0.0000	1.0000
K2PI	13	-2116.5658	4259.7793	0.0000	1.0000
HKY	15	-2114.7682	4260.3935	0.0000	1.0000
SYMIG	18	-2112.2002	4261.6283	0.0000	1.0000
SYMI	17	-2113.8245	4262.7459	0.0000	1.0000
K2P	12	-2130.0992	4284.7526	0.0000	1.0000
SYM	16	-2126.6517	4286.2767	0.0000	1.0000
F81G	15	-2144.4662	4319.7896	0.0000	1.0000
F81IG	16	-2144.4663	4321.9057	0.0000	1.0000
F81I	15	-2146.3335	4323.5240	0.0000	1.0000
F81	14	-2156.1250	4340.9987	0.0000	1.0000
JC69G	12	-2158.6588	4341.8719	0.0000	1.0000
JC69IG	13	-2158.6588	4343.9654	0.0000	1.0000
JC69I	12	-2160.6620	4345.8782	0.0000	1.0000
JC69	11	-2171.0526	4364.5734	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2092.6404	4225.2809	0.5645	0.5645
GTRIG	21	-2092.6162	4227.2324	0.2128	0.7772
GTRI	20	-2093.6942	4227.3884	0.1968	0.9740
HKYG	16	-2100.2003	4232.4005	0.0161	0.9901
HKYIG	17	-2100.1984	4234.3969	0.0059	0.9960
HKYI	16	-2101.5908	4235.1816	0.0040	1.0000
GTR	19	-2106.2186	4250.4371	0.0000	1.0000
K2PG	13	-2114.8401	4255.6802	0.0000	1.0000
K2PIG	14	-2114.8431	4257.6863	0.0000	1.0000
SYMG	17	-2112.1974	4258.3948	0.0000	1.0000
K2PI	13	-2116.5658	4259.1316	0.0000	1.0000
HKY	15	-2114.7682	4259.5364	0.0000	1.0000
SYMIG	18	-2112.2002	4260.4003	0.0000	1.0000
SYMI	17	-2113.8245	4261.6491	0.0000	1.0000
K2P	12	-2130.0992	4284.1984	0.0000	1.0000
SYM	16	-2126.6517	4285.3035	0.0000	1.0000
F81G	15	-2144.4662	4318.9325	0.0000	1.0000
F81IG	16	-2144.4663	4320.9325	0.0000	1.0000
F81I	15	-2146.3335	4322.6669	0.0000	1.0000
F81	14	-2156.1250	4340.2501	0.0000	1.0000
JC69G	12	-2158.6588	4341.3177	0.0000	1.0000
JC69IG	13	-2158.6588	4343.3177	0.0000	1.0000
JC69I	12	-2160.6620	4345.3240	0.0000	1.0000
JC69	11	-2171.0526	4364.1053	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2100.2003	4302.0982	0.7656	0.7656
HKYI	16	-2101.5908	4304.8793	0.1906	0.9562
HKYIG	17	-2100.1984	4308.4507	0.0320	0.9882
K2PG	13	-2114.8401	4312.3096	0.0046	0.9928
GTRG	20	-2092.6404	4312.4030	0.0044	0.9972
GTRI	20	-2093.6942	4314.5105	0.0015	0.9988
K2PI	13	-2116.5658	4315.7610	0.0008	0.9996
K2PIG	14	-2114.8431	4318.6718	0.0002	0.9998
GTRIG	21	-2092.6162	4318.7106	0.0002	1.0000
HKY	15	-2114.7682	4324.8780	0.0000	1.0000
SYMG	17	-2112.1974	4332.4487	0.0000	1.0000
GTR	19	-2106.2186	4333.2031	0.0000	1.0000
SYMI	17	-2113.8245	4335.7029	0.0000	1.0000
K2P	12	-2130.0992	4336.4717	0.0000	1.0000
SYMIG	18	-2112.2002	4338.8102	0.0000	1.0000
SYM	16	-2126.6517	4355.0012	0.0000	1.0000
F81G	15	-2144.4662	4384.2741	0.0000	1.0000
F81I	15	-2146.3335	4388.0085	0.0000	1.0000
F81IG	16	-2144.4663	4390.6302	0.0000	1.0000
JC69G	12	-2158.6588	4393.5910	0.0000	1.0000
JC69I	12	-2160.6620	4397.5973	0.0000	1.0000
JC69IG	13	-2158.6588	4399.9471	0.0000	1.0000
F81	14	-2156.1250	4401.2356	0.0000	1.0000
JC69	11	-2171.0526	4412.0225	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_8050.phylip = 1 - 576;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_8050.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_8050.phylip = 1 - 576;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_8050.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_8050.phylip = 1 - 576;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_8050.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

