
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:55 04/04/2011

Input data from file "591-tomodel-phylip/chrZ_7928.phylip" (7 taxa, 1114 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3209.2813	6458.5626	0.4443	0.4443
HKYG	16	-3213.9530	6459.9060	0.2269	0.6712
GTRIG	21	-3209.2687	6460.5373	0.1655	0.8367
HKYIG	17	-3213.8922	6461.7844	0.0887	0.9254
GTRI	20	-3211.1647	6462.3293	0.0676	0.9930
HKYI	16	-3217.4327	6466.8654	0.0070	1.0000
K2PG	13	-3233.0777	6492.1554	0.0000	1.0000
K2PIG	14	-3233.0095	6494.0191	0.0000	1.0000
SYMG	17	-3230.6933	6495.3865	0.0000	1.0000
SYMIG	18	-3230.6856	6497.3713	0.0000	1.0000
SYMI	17	-3232.1003	6498.2005	0.0000	1.0000
K2PI	13	-3236.5747	6499.1493	0.0000	1.0000
GTR	19	-3237.2401	6512.4801	0.0000	1.0000
HKY	15	-3243.4075	6516.8150	0.0000	1.0000
SYM	16	-3259.7979	6551.5958	0.0000	1.0000
K2P	12	-3264.3031	6552.6061	0.0000	1.0000
F81G	15	-3310.2954	6650.5907	0.0000	1.0000
F81IG	16	-3310.2940	6652.5879	0.0000	1.0000
F81I	15	-3311.7162	6653.4324	0.0000	1.0000
JC69G	12	-3326.7613	6677.5226	0.0000	1.0000
JC69IG	13	-3326.7552	6679.5105	0.0000	1.0000
JC69I	12	-3328.1558	6680.3116	0.0000	1.0000
F81	14	-3335.0520	6698.1039	0.0000	1.0000
JC69	11	-3352.3685	6726.7370	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3213.9530	6540.1574	0.9408	0.9408
HKYIG	17	-3213.8922	6547.0515	0.0300	0.9707
HKYI	16	-3217.4327	6547.1168	0.0290	0.9997
K2PG	13	-3233.0777	6557.3596	0.0002	0.9999
GTRG	20	-3209.2813	6558.8769	0.0001	1.0000
GTRI	20	-3211.1647	6562.6436	0.0000	1.0000
K2PIG	14	-3233.0095	6564.2390	0.0000	1.0000
K2PI	13	-3236.5747	6564.3536	0.0000	1.0000
GTRIG	21	-3209.2687	6565.8673	0.0000	1.0000
SYMG	17	-3230.6933	6580.6537	0.0000	1.0000
SYMI	17	-3232.1003	6583.4677	0.0000	1.0000
SYMIG	18	-3230.6856	6587.6541	0.0000	1.0000
HKY	15	-3243.4075	6592.0507	0.0000	1.0000
GTR	19	-3237.2401	6607.7787	0.0000	1.0000
K2P	12	-3264.3031	6612.7947	0.0000	1.0000
SYM	16	-3259.7979	6631.8472	0.0000	1.0000
F81G	15	-3310.2954	6725.8264	0.0000	1.0000
F81I	15	-3311.7162	6728.6680	0.0000	1.0000
F81IG	16	-3310.2940	6732.8393	0.0000	1.0000
JC69G	12	-3326.7613	6737.7111	0.0000	1.0000
JC69I	12	-3328.1558	6740.5002	0.0000	1.0000
JC69IG	13	-3326.7552	6744.7147	0.0000	1.0000
F81	14	-3335.0520	6768.3239	0.0000	1.0000
JC69	11	-3352.3685	6781.9098	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_7928.phylip = 1 - 1114;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_7928.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_7928.phylip = 1 - 1114;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_7928.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_7928.phylip = 1 - 1114;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_7928.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

