
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:53 04/04/2011

Input data from file "591-tomodel-phylip/chrZ_72.phylip" (7 taxa, 938 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3001.7512	6043.5023	0.6513	0.6513
GTRIG	21	-3002.0083	6046.0167	0.1853	0.8365
HKYIG	17	-3007.2378	6048.4757	0.0542	0.8907
GTRI	20	-3004.2524	6048.5049	0.0534	0.9441
HKYG	16	-3008.3347	6048.6693	0.0492	0.9933
HKYI	16	-3010.3213	6052.6427	0.0067	1.0000
K2PIG	14	-3037.3127	6102.6255	0.0000	1.0000
K2PG	13	-3038.3529	6102.7057	0.0000	1.0000
K2PI	13	-3040.2545	6106.5090	0.0000	1.0000
SYMG	17	-3036.3310	6106.6621	0.0000	1.0000
SYMIG	18	-3036.0513	6108.1027	0.0000	1.0000
SYMI	17	-3038.2197	6110.4395	0.0000	1.0000
GTR	19	-3060.7125	6159.4249	0.0000	1.0000
HKY	15	-3067.1508	6164.3017	0.0000	1.0000
F81G	15	-3082.8749	6195.7498	0.0000	1.0000
F81IG	16	-3082.7234	6197.4468	0.0000	1.0000
F81I	15	-3083.8819	6197.7637	0.0000	1.0000
K2P	12	-3096.8101	6217.6202	0.0000	1.0000
SYM	16	-3094.0665	6220.1331	0.0000	1.0000
JC69G	12	-3106.4152	6236.8303	0.0000	1.0000
JC69IG	13	-3106.2462	6238.4924	0.0000	1.0000
JC69I	12	-3107.4302	6238.8603	0.0000	1.0000
F81	14	-3137.4698	6302.9395	0.0000	1.0000
JC69	11	-3160.9982	6343.9964	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3008.3347	6126.1693	0.8092	0.8092
HKYI	16	-3010.3213	6130.1427	0.1110	0.9201
HKYIG	17	-3007.2378	6130.8194	0.0791	0.9993
GTRG	20	-3001.7512	6140.3773	0.0007	0.9999
GTRI	20	-3004.2524	6145.3799	0.0001	1.0000
GTRIG	21	-3002.0083	6147.7354	0.0000	1.0000
K2PG	13	-3038.3529	6165.6745	0.0000	1.0000
K2PI	13	-3040.2545	6169.4777	0.0000	1.0000
K2PIG	14	-3037.3127	6170.4380	0.0000	1.0000
SYMG	17	-3036.3310	6189.0058	0.0000	1.0000
SYMI	17	-3038.2197	6192.7832	0.0000	1.0000
SYMIG	18	-3036.0513	6195.2902	0.0000	1.0000
HKY	15	-3067.1508	6236.9579	0.0000	1.0000
GTR	19	-3060.7125	6251.4562	0.0000	1.0000
F81G	15	-3082.8749	6268.4060	0.0000	1.0000
F81I	15	-3083.8819	6270.4200	0.0000	1.0000
F81IG	16	-3082.7234	6274.9468	0.0000	1.0000
K2P	12	-3096.8101	6275.7452	0.0000	1.0000
JC69G	12	-3106.4152	6294.9553	0.0000	1.0000
JC69I	12	-3107.4302	6296.9853	0.0000	1.0000
SYM	16	-3094.0665	6297.6331	0.0000	1.0000
JC69IG	13	-3106.2462	6301.4612	0.0000	1.0000
F81	14	-3137.4698	6370.7520	0.0000	1.0000
JC69	11	-3160.9982	6397.2777	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_72.phylip = 1 - 938;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_72.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_72.phylip = 1 - 938;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_72.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_72.phylip = 1 - 938;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_72.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

