
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:52 04/04/2011

Input data from file "591-tomodel-phylip/chrZ_6644.phylip" (7 taxa, 1011 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3245.6164	6531.2327	0.6223	0.6223
GTRIG	21	-3245.6228	6533.2456	0.2275	0.8498
GTRI	20	-3247.7041	6535.4081	0.0771	0.9269
HKYG	16	-3252.1904	6536.3808	0.0474	0.9744
HKYIG	17	-3252.2075	6538.4150	0.0172	0.9915
HKYI	16	-3253.9134	6539.8267	0.0085	1.0000
GTR	19	-3271.9333	6581.8666	0.0000	1.0000
HKY	15	-3278.2959	6586.5917	0.0000	1.0000
SYMG	17	-3283.8794	6601.7587	0.0000	1.0000
SYMIG	18	-3283.8851	6603.7703	0.0000	1.0000
SYMI	17	-3285.3015	6604.6030	0.0000	1.0000
K2PG	13	-3289.4553	6604.9105	0.0000	1.0000
K2PIG	14	-3289.4713	6606.9427	0.0000	1.0000
K2PI	13	-3290.6307	6607.2613	0.0000	1.0000
SYM	16	-3310.2820	6652.5639	0.0000	1.0000
K2P	12	-3315.2859	6654.5718	0.0000	1.0000
F81G	15	-3316.7001	6663.4001	0.0000	1.0000
F81IG	16	-3316.7033	6665.4066	0.0000	1.0000
F81I	15	-3318.6578	6667.3155	0.0000	1.0000
F81	14	-3341.7647	6711.5295	0.0000	1.0000
JC69G	12	-3346.1515	6716.3031	0.0000	1.0000
JC69IG	13	-3346.1659	6718.3317	0.0000	1.0000
JC69I	12	-3347.6731	6719.3462	0.0000	1.0000
JC69	11	-3372.6899	6767.3798	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3252.1904	6615.0799	0.8263	0.8263
HKYI	16	-3253.9134	6618.5259	0.1475	0.9738
HKYIG	17	-3252.2075	6622.0328	0.0255	0.9993
GTRG	20	-3245.6164	6629.6066	0.0006	0.9999
GTRI	20	-3247.7041	6633.7820	0.0001	1.0000
GTRIG	21	-3245.6228	6636.5382	0.0000	1.0000
HKY	15	-3278.2959	6660.3721	0.0000	1.0000
K2PG	13	-3289.4553	6668.8536	0.0000	1.0000
K2PI	13	-3290.6307	6671.2044	0.0000	1.0000
GTR	19	-3271.9333	6675.3218	0.0000	1.0000
K2PIG	14	-3289.4713	6675.8044	0.0000	1.0000
SYMG	17	-3283.8794	6685.3765	0.0000	1.0000
SYMI	17	-3285.3015	6688.2208	0.0000	1.0000
SYMIG	18	-3283.8851	6692.3068	0.0000	1.0000
K2P	12	-3315.2859	6713.5961	0.0000	1.0000
SYM	16	-3310.2820	6731.2630	0.0000	1.0000
F81G	15	-3316.7001	6737.1806	0.0000	1.0000
F81I	15	-3318.6578	6741.0960	0.0000	1.0000
F81IG	16	-3316.7033	6744.1057	0.0000	1.0000
JC69G	12	-3346.1515	6775.3274	0.0000	1.0000
JC69I	12	-3347.6731	6778.3705	0.0000	1.0000
F81	14	-3341.7647	6780.3912	0.0000	1.0000
JC69IG	13	-3346.1659	6782.2748	0.0000	1.0000
JC69	11	-3372.6899	6821.4854	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_6644.phylip = 1 - 1011;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_6644.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_6644.phylip = 1 - 1011;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_6644.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_6644.phylip = 1 - 1011;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_6644.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

