
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:56 04/04/2011

Input data from file "591-tomodel-phylip/chrZ_532.phylip" (7 taxa, 608 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYG	16	-1583.0938	3199.1081	0.3786	0.3786
HKYIG	17	-1582.6144	3200.2661	0.2122	0.5908
GTRG	20	-1579.8071	3201.0452	0.1437	0.7345
HKYI	16	-1584.1882	3201.2969	0.1267	0.8612
GTRIG	21	-1579.2010	3201.9787	0.0901	0.9513
GTRI	20	-1580.8900	3203.2110	0.0487	1.0000
F81G	15	-1605.2472	3241.3053	0.0000	1.0000
HKY	15	-1605.8072	3242.4252	0.0000	1.0000
F81I	15	-1605.9543	3242.7194	0.0000	1.0000
F81IG	16	-1604.9646	3242.8496	0.0000	1.0000
GTR	19	-1602.6191	3244.5306	0.0000	1.0000
F81	14	-1625.7380	3280.1843	0.0000	1.0000
K2PG	13	-1635.0850	3296.7828	0.0000	1.0000
K2PIG	14	-1634.6479	3298.0041	0.0000	1.0000
K2PI	13	-1635.7092	3298.0312	0.0000	1.0000
SYMG	17	-1632.0983	3299.2339	0.0000	1.0000
SYMIG	18	-1631.5231	3300.2074	0.0000	1.0000
SYMI	17	-1632.8835	3300.8042	0.0000	1.0000
JC69G	12	-1653.4990	3331.5225	0.0000	1.0000
JC69IG	13	-1653.1524	3332.9175	0.0000	1.0000
JC69I	12	-1654.2176	3332.9595	0.0000	1.0000
K2P	12	-1658.5043	3341.5330	0.0000	1.0000
SYM	16	-1656.6524	3346.2253	0.0000	1.0000
JC69	11	-1674.7358	3371.9146	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-1583.0938	3198.1876	0.3430	0.3430
HKYIG	17	-1582.6144	3199.2288	0.2038	0.5468
GTRG	20	-1579.8071	3199.6142	0.1681	0.7149
HKYI	16	-1584.1882	3200.3764	0.1148	0.8297
GTRIG	21	-1579.2010	3200.4019	0.1134	0.9431
GTRI	20	-1580.8900	3201.7800	0.0569	1.0000
F81G	15	-1605.2472	3240.4945	0.0000	1.0000
HKY	15	-1605.8072	3241.6144	0.0000	1.0000
F81I	15	-1605.9543	3241.9086	0.0000	1.0000
F81IG	16	-1604.9646	3241.9291	0.0000	1.0000
GTR	19	-1602.6191	3243.2381	0.0000	1.0000
F81	14	-1625.7380	3279.4760	0.0000	1.0000
K2PG	13	-1635.0850	3296.1700	0.0000	1.0000
K2PIG	14	-1634.6479	3297.2958	0.0000	1.0000
K2PI	13	-1635.7092	3297.4184	0.0000	1.0000
SYMG	17	-1632.0983	3298.1966	0.0000	1.0000
SYMIG	18	-1631.5231	3299.0461	0.0000	1.0000
SYMI	17	-1632.8835	3299.7670	0.0000	1.0000
JC69G	12	-1653.4990	3330.9981	0.0000	1.0000
JC69IG	13	-1653.1524	3332.3047	0.0000	1.0000
JC69I	12	-1654.2176	3332.4351	0.0000	1.0000
K2P	12	-1658.5043	3341.0087	0.0000	1.0000
SYM	16	-1656.6524	3345.3048	0.0000	1.0000
JC69	11	-1674.7358	3371.4716	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1583.0938	3268.7504	0.7141	0.7141
HKYI	16	-1584.1882	3270.9392	0.2390	0.9532
HKYIG	17	-1582.6144	3274.2018	0.0468	0.9999
GTRG	20	-1579.8071	3287.8177	0.0001	1.0000
GTRI	20	-1580.8900	3289.9835	0.0000	1.0000
GTRIG	21	-1579.2010	3293.0156	0.0000	1.0000
F81G	15	-1605.2472	3306.6471	0.0000	1.0000
HKY	15	-1605.8072	3307.7670	0.0000	1.0000
F81I	15	-1605.9543	3308.0612	0.0000	1.0000
F81IG	16	-1604.9646	3312.4919	0.0000	1.0000
GTR	19	-1602.6191	3327.0314	0.0000	1.0000
F81	14	-1625.7380	3341.2185	0.0000	1.0000
K2PG	13	-1635.0850	3353.5023	0.0000	1.0000
K2PI	13	-1635.7092	3354.7507	0.0000	1.0000
K2PIG	14	-1634.6479	3359.0382	0.0000	1.0000
SYMG	17	-1632.0983	3373.1696	0.0000	1.0000
SYMI	17	-1632.8835	3374.7399	0.0000	1.0000
SYMIG	18	-1631.5231	3378.4293	0.0000	1.0000
JC69G	12	-1653.4990	3383.9202	0.0000	1.0000
JC69I	12	-1654.2176	3385.3572	0.0000	1.0000
JC69IG	13	-1653.1524	3389.6370	0.0000	1.0000
K2P	12	-1658.5043	3393.9308	0.0000	1.0000
SYM	16	-1656.6524	3415.8676	0.0000	1.0000
JC69	11	-1674.7358	3419.9836	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_532.phylip = 1 - 608;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_532.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_532.phylip = 1 - 608;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_532.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_532.phylip = 1 - 608;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_532.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

