
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:54 04/04/2011

Input data from file "591-tomodel-phylip/chrZ_4750.phylip" (7 taxa, 1086 characters)

Minimum AIC  model: GTRI
Minimum AICc model: GTRI
Minimum BIC  model: GTRI


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRI	20	-3389.7987	6819.5975	0.4151	0.4151
GTRG	20	-3390.0750	6820.1499	0.3150	0.7301
GTRIG	21	-3389.2294	6820.4587	0.2699	1.0000
HKYI	16	-3405.0915	6842.1831	0.0000	1.0000
HKYG	16	-3405.4693	6842.9386	0.0000	1.0000
HKYIG	17	-3404.7382	6843.4763	0.0000	1.0000
GTR	19	-3428.0979	6894.1959	0.0000	1.0000
HKY	15	-3443.3965	6916.7930	0.0000	1.0000
F81G	15	-3490.2152	7010.4304	0.0000	1.0000
F81I	15	-3490.4642	7010.9284	0.0000	1.0000
F81IG	16	-3490.0130	7012.0260	0.0000	1.0000
K2PG	13	-3497.4318	7020.8635	0.0000	1.0000
K2PI	13	-3497.6355	7021.2710	0.0000	1.0000
K2PIG	14	-3497.1064	7022.2128	0.0000	1.0000
SYMI	17	-3494.6757	7023.3515	0.0000	1.0000
SYMG	17	-3494.8972	7023.7944	0.0000	1.0000
SYMIG	18	-3494.3306	7024.6613	0.0000	1.0000
F81	14	-3523.8560	7075.7120	0.0000	1.0000
K2P	12	-3537.4024	7098.8048	0.0000	1.0000
SYM	16	-3534.2060	7100.4121	0.0000	1.0000
JC69G	12	-3564.0271	7152.0542	0.0000	1.0000
JC69I	12	-3564.6010	7153.2020	0.0000	1.0000
JC69IG	13	-3563.9263	7153.8526	0.0000	1.0000
JC69	11	-3599.5793	7221.1586	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRI	20	-3389.7987	6919.4026	0.4391	0.4391
GTRG	20	-3390.0750	6919.9550	0.3331	0.7721
HKYI	16	-3405.0915	6922.0272	0.1182	0.8903
HKYG	16	-3405.4693	6922.7827	0.0810	0.9713
GTRIG	21	-3389.2294	6925.2541	0.0235	0.9949
HKYIG	17	-3404.7382	6928.3107	0.0051	1.0000
GTR	19	-3428.0979	6989.0108	0.0000	1.0000
HKY	15	-3443.3965	6991.6469	0.0000	1.0000
F81G	15	-3490.2152	7085.2842	0.0000	1.0000
K2PG	13	-3497.4318	7085.7369	0.0000	1.0000
F81I	15	-3490.4642	7085.7822	0.0000	1.0000
K2PI	13	-3497.6355	7086.1444	0.0000	1.0000
F81IG	16	-3490.0130	7091.8701	0.0000	1.0000
K2PIG	14	-3497.1064	7092.0764	0.0000	1.0000
SYMI	17	-3494.6757	7108.1858	0.0000	1.0000
SYMG	17	-3494.8972	7108.6288	0.0000	1.0000
SYMIG	18	-3494.3306	7114.4859	0.0000	1.0000
F81	14	-3523.8560	7145.5756	0.0000	1.0000
K2P	12	-3537.4024	7158.6879	0.0000	1.0000
SYM	16	-3534.2060	7180.2562	0.0000	1.0000
JC69G	12	-3564.0271	7211.9373	0.0000	1.0000
JC69I	12	-3564.6010	7213.0850	0.0000	1.0000
JC69IG	13	-3563.9263	7218.7259	0.0000	1.0000
JC69	11	-3599.5793	7276.0514	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_4750.phylip = 1 - 1086;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_4750.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_4750.phylip = 1 - 1086;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_4750.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_4750.phylip = 1 - 1086;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_4750.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

