
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:52 04/04/2011

Input data from file "591-tomodel-phylip/chrZ_3328.phylip" (7 taxa, 631 characters)

Minimum AIC  model: HKY
Minimum AICc model: HKY
Minimum BIC  model: HKY


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKY	15	-1233.2239	2497.2282	0.2793	0.2793
HKYI	16	-1232.4485	2497.7830	0.2117	0.4910
HKYG	16	-1232.4813	2497.8486	0.2048	0.6958
GTR	19	-1230.1733	2499.5905	0.0857	0.7815
HKYIG	17	-1232.4800	2499.9583	0.0713	0.8529
GTRI	20	-1229.3963	2500.1696	0.0642	0.9170
GTRG	20	-1229.4486	2500.2741	0.0609	0.9779
GTRIG	21	-1229.3957	2502.3087	0.0220	1.0000
F81	14	-1244.3956	2517.4729	0.0000	1.0000
F81I	15	-1243.6168	2518.0141	0.0000	1.0000
F81G	15	-1243.6429	2518.0662	0.0000	1.0000
F81IG	16	-1243.6420	2520.1699	0.0000	1.0000
SYM	16	-1255.3064	2543.4989	0.0000	1.0000
SYMI	17	-1254.5510	2544.1004	0.0000	1.0000
SYMG	17	-1254.5856	2544.1696	0.0000	1.0000
K2P	12	-1260.6959	2545.8967	0.0000	1.0000
SYMIG	18	-1254.5837	2546.2849	0.0000	1.0000
K2PI	13	-1259.9303	2546.4506	0.0000	1.0000
K2PG	13	-1259.9503	2546.4906	0.0000	1.0000
K2PIG	14	-1259.9496	2548.5809	0.0000	1.0000
JC69	11	-1271.4374	2565.3013	0.0000	1.0000
JC69I	12	-1270.7236	2565.9522	0.0000	1.0000
JC69G	12	-1270.7488	2566.0025	0.0000	1.0000
JC69IG	13	-1270.7472	2568.0843	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKY	15	-1233.2239	2496.4478	0.2525	0.2525
HKYI	16	-1232.4485	2496.8970	0.2017	0.4541
HKYG	16	-1232.4813	2496.9626	0.1952	0.6493
GTR	19	-1230.1733	2498.3466	0.0977	0.7470
GTRI	20	-1229.3963	2498.7926	0.0782	0.8251
GTRG	20	-1229.4486	2498.8971	0.0742	0.8993
HKYIG	17	-1232.4800	2498.9599	0.0719	0.9712
GTRIG	21	-1229.3957	2500.7914	0.0288	1.0000
F81	14	-1244.3956	2516.7911	0.0000	1.0000
F81I	15	-1243.6168	2517.2336	0.0000	1.0000
F81G	15	-1243.6429	2517.2857	0.0000	1.0000
F81IG	16	-1243.6420	2519.2839	0.0000	1.0000
SYM	16	-1255.3064	2542.6129	0.0000	1.0000
SYMI	17	-1254.5510	2543.1021	0.0000	1.0000
SYMG	17	-1254.5856	2543.1712	0.0000	1.0000
SYMIG	18	-1254.5837	2545.1673	0.0000	1.0000
K2P	12	-1260.6959	2545.3918	0.0000	1.0000
K2PI	13	-1259.9303	2545.8606	0.0000	1.0000
K2PG	13	-1259.9503	2545.9007	0.0000	1.0000
K2PIG	14	-1259.9496	2547.8991	0.0000	1.0000
JC69	11	-1271.4374	2564.8748	0.0000	1.0000
JC69I	12	-1270.7236	2565.4473	0.0000	1.0000
JC69G	12	-1270.7488	2565.4977	0.0000	1.0000
JC69IG	13	-1270.7472	2567.4944	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKY	15	-1233.2239	2563.1573	0.8519	0.8519
HKYI	16	-1232.4485	2568.0539	0.0736	0.9255
HKYG	16	-1232.4813	2568.1195	0.0713	0.9968
HKYIG	17	-1232.4800	2574.5641	0.0028	0.9996
F81	14	-1244.3956	2579.0534	0.0003	0.9999
GTR	19	-1230.1733	2582.8455	0.0000	0.9999
F81I	15	-1243.6168	2583.9432	0.0000	1.0000
F81G	15	-1243.6429	2583.9953	0.0000	1.0000
GTRI	20	-1229.3963	2587.7387	0.0000	1.0000
GTRG	20	-1229.4486	2587.8432	0.0000	1.0000
F81IG	16	-1243.6420	2590.4408	0.0000	1.0000
GTRIG	21	-1229.3957	2594.1848	0.0000	1.0000
K2P	12	-1260.6959	2598.7595	0.0000	1.0000
K2PI	13	-1259.9303	2603.6756	0.0000	1.0000
K2PG	13	-1259.9503	2603.7157	0.0000	1.0000
K2PIG	14	-1259.9496	2610.1614	0.0000	1.0000
SYM	16	-1255.3064	2613.7698	0.0000	1.0000
JC69	11	-1271.4374	2613.7951	0.0000	1.0000
SYMI	17	-1254.5510	2618.7063	0.0000	1.0000
SYMG	17	-1254.5856	2618.7754	0.0000	1.0000
JC69I	12	-1270.7236	2618.8150	0.0000	1.0000
JC69G	12	-1270.7488	2618.8654	0.0000	1.0000
SYMIG	18	-1254.5837	2625.2188	0.0000	1.0000
JC69IG	13	-1270.7472	2625.3093	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKY)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_3328.phylip = 1 - 631;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_3328.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=equal;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0);
END;


[Mrbayes block for the best AICc model (HKY)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_3328.phylip = 1 - 631;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_3328.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=equal;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0);
END;


[Mrbayes block for the best BIC model (HKY)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_3328.phylip = 1 - 631;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_3328.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=equal;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0);
END;


-------------------------------------------------------------
End of Output

