
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:49 04/04/2011

Input data from file "591-tomodel-phylip/chrZ_11420.phylip" (7 taxa, 999 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-2213.2653	4458.5307	0.3369	0.3369
HKYI	16	-2213.5480	4459.0961	0.2540	0.5909
HKYIG	17	-2213.1645	4460.3289	0.1371	0.7280
GTRG	20	-2210.3509	4460.7018	0.1138	0.8418
GTRI	20	-2210.5198	4461.0396	0.0961	0.9379
GTRIG	21	-2209.9564	4461.9128	0.0621	1.0000
HKY	15	-2224.4482	4478.8964	0.0000	1.0000
GTR	19	-2225.6655	4489.3310	0.0000	1.0000
F81G	15	-2252.5521	4535.1042	0.0000	1.0000
F81IG	16	-2252.1437	4536.2874	0.0000	1.0000
F81I	15	-2253.2047	4536.4094	0.0000	1.0000
K2PG	13	-2257.0240	4540.0480	0.0000	1.0000
K2PI	13	-2257.3357	4540.6714	0.0000	1.0000
K2PIG	14	-2256.8924	4541.7849	0.0000	1.0000
SYMG	17	-2256.3323	4546.6645	0.0000	1.0000
SYMIG	18	-2255.8488	4547.6976	0.0000	1.0000
SYMI	17	-2256.8890	4547.7780	0.0000	1.0000
F81	14	-2266.7314	4561.4627	0.0000	1.0000
K2P	12	-2268.7398	4561.4796	0.0000	1.0000
SYM	16	-2272.1046	4576.2092	0.0000	1.0000
JC69G	12	-2292.8059	4609.6118	0.0000	1.0000
JC69IG	13	-2292.3550	4610.7101	0.0000	1.0000
JC69I	12	-2293.4568	4610.9137	0.0000	1.0000
JC69	11	-2307.5162	4637.0324	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2213.2653	4537.0387	0.5589	0.5589
HKYI	16	-2213.5480	4537.6042	0.4213	0.9802
HKYIG	17	-2213.1645	4543.7438	0.0196	0.9997
HKY	15	-2224.4482	4552.4977	0.0002	1.0000
GTRG	20	-2210.3509	4558.8369	0.0000	1.0000
GTRI	20	-2210.5198	4559.1747	0.0000	1.0000
GTRIG	21	-2209.9564	4564.9546	0.0000	1.0000
GTR	19	-2225.6655	4582.5594	0.0000	1.0000
K2PG	13	-2257.0240	4603.8358	0.0000	1.0000
K2PI	13	-2257.3357	4604.4592	0.0000	1.0000
F81G	15	-2252.5521	4608.7055	0.0000	1.0000
F81I	15	-2253.2047	4610.0107	0.0000	1.0000
K2PIG	14	-2256.8924	4610.4794	0.0000	1.0000
F81IG	16	-2252.1437	4614.7955	0.0000	1.0000
K2P	12	-2268.7398	4620.3607	0.0000	1.0000
SYMG	17	-2256.3323	4630.0794	0.0000	1.0000
F81	14	-2266.7314	4630.1573	0.0000	1.0000
SYMI	17	-2256.8890	4631.1928	0.0000	1.0000
SYMIG	18	-2255.8488	4636.0192	0.0000	1.0000
SYM	16	-2272.1046	4654.7173	0.0000	1.0000
JC69G	12	-2292.8059	4668.4929	0.0000	1.0000
JC69I	12	-2293.4568	4669.7947	0.0000	1.0000
JC69IG	13	-2292.3550	4674.4979	0.0000	1.0000
JC69	11	-2307.5162	4691.0067	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_11420.phylip = 1 - 999;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_11420.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_11420.phylip = 1 - 999;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_11420.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_11420.phylip = 1 - 999;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_11420.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

