
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:56 04/04/2011

Input data from file "591-tomodel-phylip/chrZ_10804.phylip" (7 taxa, 1013 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3464.0850	6968.1701	0.6683	0.6683
GTRIG	21	-3464.1090	6970.2181	0.2400	0.9083
GTRI	20	-3466.0748	6972.1496	0.0914	0.9997
HKYG	16	-3476.1794	6984.3588	0.0002	0.9999
HKYIG	17	-3476.2105	6986.4210	0.0001	1.0000
HKYI	16	-3477.9790	6987.9581	0.0000	1.0000
SYMG	17	-3485.4507	7004.9013	0.0000	1.0000
SYMIG	18	-3485.3985	7006.7971	0.0000	1.0000
SYMI	17	-3486.6508	7007.3016	0.0000	1.0000
K2PG	13	-3495.7232	7017.4464	0.0000	1.0000
K2PIG	14	-3495.7459	7019.4918	0.0000	1.0000
K2PI	13	-3497.3823	7020.7645	0.0000	1.0000
GTR	19	-3515.0779	7068.1558	0.0000	1.0000
HKY	15	-3526.6582	7083.3164	0.0000	1.0000
F81G	15	-3532.3683	7094.7365	0.0000	1.0000
F81IG	16	-3532.2716	7096.5431	0.0000	1.0000
F81I	15	-3533.2906	7096.5812	0.0000	1.0000
SYM	16	-3535.7674	7103.5349	0.0000	1.0000
K2P	12	-3547.0878	7118.1757	0.0000	1.0000
JC69G	12	-3552.1525	7128.3050	0.0000	1.0000
JC69I	12	-3552.6724	7129.3448	0.0000	1.0000
JC69IG	13	-3551.9306	7129.8612	0.0000	1.0000
F81	14	-3579.4706	7186.9413	0.0000	1.0000
JC69	11	-3598.5862	7219.1723	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3476.1794	7063.0896	0.7146	0.7146
GTRG	20	-3464.0850	7066.5835	0.1246	0.8391
HKYI	16	-3477.9790	7066.6888	0.1182	0.9573
HKYIG	17	-3476.2105	7070.0725	0.0218	0.9791
GTRI	20	-3466.0748	7070.5631	0.0170	0.9961
GTRIG	21	-3464.1090	7073.5522	0.0038	0.9999
K2PG	13	-3495.7232	7081.4151	0.0001	1.0000
K2PI	13	-3497.3823	7084.7333	0.0000	1.0000
K2PIG	14	-3495.7459	7088.3812	0.0000	1.0000
SYMG	17	-3485.4507	7088.5527	0.0000	1.0000
SYMI	17	-3486.6508	7090.9530	0.0000	1.0000
SYMIG	18	-3485.3985	7095.3692	0.0000	1.0000
HKY	15	-3526.6582	7157.1264	0.0000	1.0000
GTR	19	-3515.0779	7161.6486	0.0000	1.0000
F81G	15	-3532.3683	7168.5466	0.0000	1.0000
F81I	15	-3533.2906	7170.3913	0.0000	1.0000
F81IG	16	-3532.2716	7175.2739	0.0000	1.0000
K2P	12	-3547.0878	7177.2237	0.0000	1.0000
SYM	16	-3535.7674	7182.2656	0.0000	1.0000
JC69G	12	-3552.1525	7187.3530	0.0000	1.0000
JC69I	12	-3552.6724	7188.3929	0.0000	1.0000
JC69IG	13	-3551.9306	7193.8299	0.0000	1.0000
F81	14	-3579.4706	7255.8307	0.0000	1.0000
JC69	11	-3598.5862	7273.2997	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_10804.phylip = 1 - 1013;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_10804.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_10804.phylip = 1 - 1013;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_10804.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chrZ_10804.phylip = 1 - 1013;
 Partition Dummy = 1:591-tomodel-phylip/chrZ_10804.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

