
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:53 04/04/2011

Input data from file "591-tomodel-phylip/chr9_7189.phylip" (7 taxa, 1021 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3168.9377	6377.8753	0.7198	0.7198
GTRIG	21	-3168.9376	6379.8753	0.2648	0.9846
GTRI	20	-3172.7813	6385.5626	0.0154	1.0000
HKYG	16	-3190.5869	6413.1739	0.0000	1.0000
HKYIG	17	-3190.5870	6415.1740	0.0000	1.0000
HKYI	16	-3194.0701	6420.1402	0.0000	1.0000
GTR	19	-3194.5109	6427.0218	0.0000	1.0000
SYMG	17	-3202.3900	6438.7800	0.0000	1.0000
SYMIG	18	-3202.3900	6440.7799	0.0000	1.0000
SYMI	17	-3206.2308	6446.4615	0.0000	1.0000
HKY	15	-3213.0345	6456.0689	0.0000	1.0000
K2PG	13	-3219.1991	6464.3983	0.0000	1.0000
K2PIG	14	-3219.1992	6466.3984	0.0000	1.0000
K2PI	13	-3222.6753	6471.3505	0.0000	1.0000
SYM	16	-3225.2912	6482.5823	0.0000	1.0000
K2P	12	-3240.9574	6505.9148	0.0000	1.0000
F81G	15	-3251.8018	6533.6036	0.0000	1.0000
F81IG	16	-3251.8019	6535.6038	0.0000	1.0000
F81I	15	-3254.0489	6538.0978	0.0000	1.0000
F81	14	-3272.7671	6573.5342	0.0000	1.0000
JC69G	12	-3281.3180	6586.6360	0.0000	1.0000
JC69IG	13	-3281.3181	6588.6362	0.0000	1.0000
JC69I	12	-3283.6044	6591.2088	0.0000	1.0000
JC69	11	-3301.4543	6624.9087	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-3168.9377	6476.4461	0.9495	0.9495
GTRIG	21	-3168.9376	6483.3746	0.0297	0.9792
GTRI	20	-3172.7813	6484.1334	0.0203	0.9996
HKYG	16	-3190.5869	6492.0305	0.0004	1.0000
HKYIG	17	-3190.5870	6498.9591	0.0000	1.0000
HKYI	16	-3194.0701	6498.9968	0.0000	1.0000
GTR	19	-3194.5109	6520.6640	0.0000	1.0000
SYMG	17	-3202.3900	6522.5651	0.0000	1.0000
K2PG	13	-3219.1991	6528.4693	0.0000	1.0000
SYMIG	18	-3202.3900	6529.4936	0.0000	1.0000
HKY	15	-3213.0345	6529.9970	0.0000	1.0000
SYMI	17	-3206.2308	6530.2467	0.0000	1.0000
K2PIG	14	-3219.1992	6535.3979	0.0000	1.0000
K2PI	13	-3222.6753	6535.4215	0.0000	1.0000
SYM	16	-3225.2912	6561.4389	0.0000	1.0000
K2P	12	-3240.9574	6565.0573	0.0000	1.0000
F81G	15	-3251.8018	6607.5316	0.0000	1.0000
F81I	15	-3254.0489	6612.0258	0.0000	1.0000
F81IG	16	-3251.8019	6614.4604	0.0000	1.0000
F81	14	-3272.7671	6642.5337	0.0000	1.0000
JC69G	12	-3281.3180	6645.7785	0.0000	1.0000
JC69I	12	-3283.6044	6650.3513	0.0000	1.0000
JC69IG	13	-3281.3181	6652.7072	0.0000	1.0000
JC69	11	-3301.4543	6679.1226	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_7189.phylip = 1 - 1021;
 Partition Dummy = 1:591-tomodel-phylip/chr9_7189.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_7189.phylip = 1 - 1021;
 Partition Dummy = 1:591-tomodel-phylip/chr9_7189.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_7189.phylip = 1 - 1021;
 Partition Dummy = 1:591-tomodel-phylip/chr9_7189.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

