
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:52 04/04/2011

Input data from file "591-tomodel-phylip/chr9_7150.phylip" (7 taxa, 371 characters)

Minimum AIC  model: HKYI
Minimum AICc model: HKYI
Minimum BIC  model: HKYI


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYI	16	-785.6404	1604.8176	0.3762	0.3762
HKYG	16	-785.6658	1604.8683	0.3668	0.7430
GTRI	20	-782.0525	1606.5050	0.1618	0.9048
GTRG	20	-783.7129	1609.8257	0.0308	0.9356
HKY	15	-789.7226	1610.7973	0.0189	0.9545
GTRIG	21	-783.1582	1610.9639	0.0174	0.9719
HKYIG	17	-787.6194	1610.9726	0.0173	0.9893
GTR	19	-785.8863	1611.9379	0.0107	1.0000
K2PG	13	-798.5349	1624.0895	0.0000	1.0000
SYMI	17	-795.2264	1626.1866	0.0000	1.0000
SYMIG	18	-795.2752	1628.4935	0.0000	1.0000
K2P	12	-802.0548	1628.9812	0.0000	1.0000
K2PI	13	-800.9964	1629.0123	0.0000	1.0000
SYM	16	-798.5034	1630.5435	0.0000	1.0000
K2PIG	14	-800.8894	1630.9586	0.0000	1.0000
SYMG	17	-797.8104	1631.3545	0.0000	1.0000
F81I	15	-810.3810	1652.1141	0.0000	1.0000
F81G	15	-811.5074	1654.3669	0.0000	1.0000
F81IG	16	-810.4850	1654.5068	0.0000	1.0000
F81	14	-813.6415	1656.4628	0.0000	1.0000
JC69I	12	-821.2829	1667.4373	0.0000	1.0000
JC69G	12	-821.3999	1667.6714	0.0000	1.0000
JC69IG	13	-821.3999	1669.8194	0.0000	1.0000
JC69	11	-824.4167	1671.5687	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYI	16	-785.6404	1603.2808	0.3356	0.3356
HKYG	16	-785.6658	1603.3316	0.3272	0.6629
GTRI	20	-782.0525	1604.1050	0.2223	0.8851
GTRG	20	-783.7129	1607.4257	0.0422	0.9274
GTRIG	21	-783.1582	1608.3163	0.0271	0.9544
HKYIG	17	-787.6194	1609.2388	0.0171	0.9715
HKY	15	-789.7226	1609.4452	0.0154	0.9869
GTR	19	-785.8863	1609.7727	0.0131	1.0000
K2PG	13	-798.5349	1623.0699	0.0000	1.0000
SYMI	17	-795.2264	1624.4529	0.0000	1.0000
SYMIG	18	-795.2752	1626.5503	0.0000	1.0000
K2PI	13	-800.9964	1627.9927	0.0000	1.0000
K2P	12	-802.0548	1628.1097	0.0000	1.0000
SYM	16	-798.5034	1629.0068	0.0000	1.0000
SYMG	17	-797.8104	1629.6208	0.0000	1.0000
K2PIG	14	-800.8894	1629.7788	0.0000	1.0000
F81I	15	-810.3810	1650.7620	0.0000	1.0000
F81IG	16	-810.4850	1652.9701	0.0000	1.0000
F81G	15	-811.5074	1653.0148	0.0000	1.0000
F81	14	-813.6415	1655.2830	0.0000	1.0000
JC69I	12	-821.2829	1666.5658	0.0000	1.0000
JC69G	12	-821.3999	1666.7999	0.0000	1.0000
JC69IG	13	-821.3999	1668.7998	0.0000	1.0000
JC69	11	-824.4167	1670.8333	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-785.6404	1665.9401	0.4278	0.4278
HKYG	16	-785.6658	1665.9908	0.4171	0.8450
HKY	15	-789.7226	1668.1882	0.1390	0.9840
K2PG	13	-798.5349	1673.9805	0.0077	0.9917
K2P	12	-802.0548	1675.1041	0.0044	0.9961
HKYIG	17	-787.6194	1675.8143	0.0031	0.9991
K2PI	13	-800.9964	1678.9033	0.0007	0.9998
GTRI	20	-782.0525	1682.4291	0.0001	0.9999
GTR	19	-785.8863	1684.1805	0.0000	0.9999
K2PIG	14	-800.8894	1684.6057	0.0000	1.0000
GTRG	20	-783.7129	1685.7498	0.0000	1.0000
GTRIG	21	-783.1582	1690.5566	0.0000	1.0000
SYMI	17	-795.2264	1691.0283	0.0000	1.0000
SYM	16	-798.5034	1691.6660	0.0000	1.0000
SYMG	17	-797.8104	1696.1963	0.0000	1.0000
SYMIG	18	-795.2752	1697.0420	0.0000	1.0000
F81I	15	-810.3810	1709.5050	0.0000	1.0000
F81	14	-813.6415	1710.1098	0.0000	1.0000
F81G	15	-811.5074	1711.7578	0.0000	1.0000
JC69I	12	-821.2829	1713.5603	0.0000	1.0000
JC69G	12	-821.3999	1713.7943	0.0000	1.0000
JC69	11	-824.4167	1713.9115	0.0000	1.0000
F81IG	16	-810.4850	1715.6293	0.0000	1.0000
JC69IG	13	-821.3999	1719.7104	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_7150.phylip = 1 - 371;
 Partition Dummy = 1:591-tomodel-phylip/chr9_7150.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_7150.phylip = 1 - 371;
 Partition Dummy = 1:591-tomodel-phylip/chr9_7150.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_7150.phylip = 1 - 371;
 Partition Dummy = 1:591-tomodel-phylip/chr9_7150.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

