
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:51 04/04/2011

Input data from file "591-tomodel-phylip/chr9_7138.phylip" (7 taxa, 535 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1531.6175	3104.8692	0.5282	0.5282
GTRI	20	-1532.3202	3106.2747	0.2616	0.7898
GTRIG	21	-1531.6197	3107.0406	0.1784	0.9682
HKYG	16	-1539.3596	3111.7695	0.0168	0.9849
HKYI	16	-1539.9625	3112.9751	0.0092	0.9941
HKYIG	17	-1539.3385	3113.8608	0.0059	1.0000
GTR	19	-1545.8720	3131.2197	0.0000	1.0000
HKY	15	-1555.2506	3141.4261	0.0000	1.0000
F81G	15	-1569.6411	3170.2071	0.0000	1.0000
F81I	15	-1570.4226	3171.7700	0.0000	1.0000
F81IG	16	-1569.5837	3172.2176	0.0000	1.0000
SYMG	17	-1573.8183	3182.8204	0.0000	1.0000
SYMIG	18	-1573.7971	3184.9197	0.0000	1.0000
SYMI	17	-1577.4376	3190.0589	0.0000	1.0000
K2PIG	14	-1580.7903	3190.3883	0.0000	1.0000
F81	14	-1581.4122	3191.6321	0.0000	1.0000
K2PG	13	-1582.5458	3191.7903	0.0000	1.0000
K2PI	13	-1583.5126	3193.7238	0.0000	1.0000
SYM	16	-1588.0391	3209.1285	0.0000	1.0000
K2P	12	-1596.1466	3216.8910	0.0000	1.0000
JC69G	12	-1605.4501	3235.4980	0.0000	1.0000
JC69I	12	-1606.3549	3237.3076	0.0000	1.0000
JC69IG	13	-1605.3779	3237.4544	0.0000	1.0000
JC69	11	-1617.8266	3258.1581	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1531.6175	3103.2350	0.5241	0.5241
GTRI	20	-1532.3202	3104.6405	0.2596	0.7837
GTRIG	21	-1531.6197	3105.2394	0.1924	0.9761
HKYG	16	-1539.3596	3110.7193	0.0124	0.9885
HKYI	16	-1539.9625	3111.9249	0.0068	0.9953
HKYIG	17	-1539.3385	3112.6771	0.0047	1.0000
GTR	19	-1545.8720	3129.7440	0.0000	1.0000
HKY	15	-1555.2506	3140.5013	0.0000	1.0000
F81G	15	-1569.6411	3169.2822	0.0000	1.0000
F81I	15	-1570.4226	3170.8451	0.0000	1.0000
F81IG	16	-1569.5837	3171.1674	0.0000	1.0000
SYMG	17	-1573.8183	3181.6367	0.0000	1.0000
SYMIG	18	-1573.7971	3183.5942	0.0000	1.0000
SYMI	17	-1577.4376	3188.8752	0.0000	1.0000
K2PIG	14	-1580.7903	3189.5806	0.0000	1.0000
F81	14	-1581.4122	3190.8244	0.0000	1.0000
K2PG	13	-1582.5458	3191.0916	0.0000	1.0000
K2PI	13	-1583.5126	3193.0252	0.0000	1.0000
SYM	16	-1588.0391	3208.0783	0.0000	1.0000
K2P	12	-1596.1466	3216.2933	0.0000	1.0000
JC69G	12	-1605.4501	3234.9003	0.0000	1.0000
JC69I	12	-1606.3549	3236.7099	0.0000	1.0000
JC69IG	13	-1605.3779	3236.7557	0.0000	1.0000
JC69	11	-1617.8266	3257.6533	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1539.3596	3179.2355	0.6235	0.6235
HKYI	16	-1539.9625	3180.4412	0.3412	0.9647
HKYIG	17	-1539.3385	3185.4756	0.0275	0.9923
GTRG	20	-1531.6175	3188.8803	0.0050	0.9973
GTRI	20	-1532.3202	3190.2858	0.0025	0.9998
GTRIG	21	-1531.6197	3195.1670	0.0002	1.0000
HKY	15	-1555.2506	3204.7353	0.0000	1.0000
GTR	19	-1545.8720	3211.1071	0.0000	1.0000
F81G	15	-1569.6411	3233.5162	0.0000	1.0000
F81I	15	-1570.4226	3235.0791	0.0000	1.0000
F81IG	16	-1569.5837	3239.6836	0.0000	1.0000
K2PG	13	-1582.5458	3246.7611	0.0000	1.0000
K2PI	13	-1583.5126	3248.6946	0.0000	1.0000
K2PIG	14	-1580.7903	3249.5324	0.0000	1.0000
F81	14	-1581.4122	3250.7762	0.0000	1.0000
SYMG	17	-1573.8183	3254.4352	0.0000	1.0000
SYMIG	18	-1573.7971	3260.6750	0.0000	1.0000
SYMI	17	-1577.4376	3261.6737	0.0000	1.0000
K2P	12	-1596.1466	3267.6805	0.0000	1.0000
SYM	16	-1588.0391	3276.5945	0.0000	1.0000
JC69G	12	-1605.4501	3286.2875	0.0000	1.0000
JC69I	12	-1606.3549	3288.0971	0.0000	1.0000
JC69IG	13	-1605.3779	3292.4252	0.0000	1.0000
JC69	11	-1617.8266	3304.7582	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_7138.phylip = 1 - 535;
 Partition Dummy = 1:591-tomodel-phylip/chr9_7138.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_7138.phylip = 1 - 535;
 Partition Dummy = 1:591-tomodel-phylip/chr9_7138.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_7138.phylip = 1 - 535;
 Partition Dummy = 1:591-tomodel-phylip/chr9_7138.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

