
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:51 04/04/2011

Input data from file "591-tomodel-phylip/chr9_6414.phylip" (7 taxa, 1049 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: K2PG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-2892.4504	5816.9008	0.1411	0.1411
K2PG	13	-2895.5836	5817.1672	0.1235	0.2646
SYMG	17	-2891.6458	5817.2916	0.1160	0.3806
SYMI	17	-2891.6625	5817.3250	0.1141	0.4947
GTRI	20	-2888.8980	5817.7960	0.0902	0.5849
GTRG	20	-2888.9385	5817.8770	0.0866	0.6715
HKYI	16	-2893.0982	5818.1965	0.0738	0.7453
K2PI	13	-2896.1660	5818.3321	0.0690	0.8142
HKYIG	17	-2892.2426	5818.4852	0.0639	0.8781
K2PIG	14	-2895.4249	5818.8497	0.0532	0.9314
SYMIG	18	-2891.7949	5819.5897	0.0368	0.9681
GTRIG	21	-2888.9385	5819.8770	0.0319	1.0000
JC69G	12	-2922.9215	5869.8430	0.0000	1.0000
JC69I	12	-2923.2054	5870.4108	0.0000	1.0000
F81G	15	-2920.2422	5870.4843	0.0000	1.0000
F81I	15	-2920.5762	5871.1525	0.0000	1.0000
JC69IG	13	-2922.9082	5871.8164	0.0000	1.0000
F81IG	16	-2920.2054	5872.4108	0.0000	1.0000
SYM	16	-2942.2148	5916.4297	0.0000	1.0000
K2P	12	-2946.4459	5916.8918	0.0000	1.0000
HKY	15	-2944.3097	5918.6195	0.0000	1.0000
GTR	19	-2940.7573	5919.5146	0.0000	1.0000
JC69	11	-2970.7078	5963.4157	0.0000	1.0000
F81	14	-2968.6622	5965.3243	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-2895.5836	5881.5899	0.6266	0.6266
K2PI	13	-2896.1660	5882.7548	0.3500	0.9766
K2PIG	14	-2895.4249	5888.2280	0.0227	0.9993
HKYG	16	-2892.4504	5896.1903	0.0004	0.9997
HKYI	16	-2893.0982	5897.4860	0.0002	0.9999
SYMG	17	-2891.6458	5901.5367	0.0000	1.0000
SYMI	17	-2891.6625	5901.5701	0.0000	1.0000
HKYIG	17	-2892.2426	5902.7303	0.0000	1.0000
SYMIG	18	-2891.7949	5908.7904	0.0000	1.0000
GTRI	20	-2888.8980	5916.9078	0.0000	1.0000
GTRG	20	-2888.9385	5916.9889	0.0000	1.0000
GTRIG	21	-2888.9385	5923.9444	0.0000	1.0000
JC69G	12	-2922.9215	5929.3101	0.0000	1.0000
JC69I	12	-2923.2054	5929.8779	0.0000	1.0000
JC69IG	13	-2922.9082	5936.2391	0.0000	1.0000
F81G	15	-2920.2422	5944.8182	0.0000	1.0000
F81I	15	-2920.5762	5945.4864	0.0000	1.0000
F81IG	16	-2920.2054	5951.7003	0.0000	1.0000
K2P	12	-2946.4459	5976.3589	0.0000	1.0000
HKY	15	-2944.3097	5992.9534	0.0000	1.0000
SYM	16	-2942.2148	5995.7192	0.0000	1.0000
GTR	19	-2940.7573	6013.6709	0.0000	1.0000
JC69	11	-2970.7078	6017.9272	0.0000	1.0000
F81	14	-2968.6622	6034.7026	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_6414.phylip = 1 - 1049;
 Partition Dummy = 1:591-tomodel-phylip/chr9_6414.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_6414.phylip = 1 - 1049;
 Partition Dummy = 1:591-tomodel-phylip/chr9_6414.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_6414.phylip = 1 - 1049;
 Partition Dummy = 1:591-tomodel-phylip/chr9_6414.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

