
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:50 04/04/2011

Input data from file "591-tomodel-phylip/chr9_6328.phylip" (7 taxa, 1142 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3191.0973	6422.1946	0.6449	0.6449
GTRIG	21	-3191.0468	6424.0937	0.2495	0.8945
GTRI	20	-3192.9696	6425.9393	0.0992	0.9936
HKYG	16	-3200.2299	6432.4598	0.0038	0.9974
HKYIG	17	-3200.1733	6434.3466	0.0015	0.9989
HKYI	16	-3202.2685	6436.5371	0.0005	0.9994
SYMG	17	-3201.6797	6437.3594	0.0003	0.9997
SYMIG	18	-3201.6346	6439.2691	0.0001	0.9999
SYMI	17	-3203.3647	6440.7294	0.0001	0.9999
K2PG	13	-3207.6396	6441.2792	0.0000	1.0000
K2PIG	14	-3207.5800	6443.1600	0.0000	1.0000
K2PI	13	-3209.5963	6445.1925	0.0000	1.0000
GTR	19	-3217.2645	6472.5291	0.0000	1.0000
HKY	15	-3226.1897	6482.3795	0.0000	1.0000
SYM	16	-3227.5715	6487.1431	0.0000	1.0000
K2P	12	-3233.8764	6491.7528	0.0000	1.0000
F81G	15	-3236.8388	6503.6777	0.0000	1.0000
F81IG	16	-3236.8152	6505.6303	0.0000	1.0000
F81I	15	-3238.7186	6507.4373	0.0000	1.0000
JC69G	12	-3243.0320	6510.0641	0.0000	1.0000
JC69IG	13	-3243.0046	6512.0093	0.0000	1.0000
JC69I	12	-3244.8799	6513.7598	0.0000	1.0000
F81	14	-3260.4035	6548.8070	0.0000	1.0000
JC69	11	-3266.7944	6555.5887	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-3207.6396	6506.8062	0.8175	0.8175
K2PI	13	-3209.5963	6510.7195	0.1155	0.9331
HKYG	16	-3200.2299	6513.1084	0.0350	0.9681
K2PIG	14	-3207.5800	6513.7275	0.0257	0.9938
HKYI	16	-3202.2685	6517.1856	0.0046	0.9983
HKYIG	17	-3200.1733	6520.0357	0.0011	0.9994
GTRG	20	-3191.0973	6523.0053	0.0002	0.9997
SYMG	17	-3201.6797	6523.0485	0.0002	0.9999
SYMI	17	-3203.3647	6526.4185	0.0000	0.9999
GTRI	20	-3192.9696	6526.7500	0.0000	1.0000
GTRIG	21	-3191.0468	6529.9449	0.0000	1.0000
SYMIG	18	-3201.6346	6529.9988	0.0000	1.0000
K2P	12	-3233.8764	6552.2392	0.0000	1.0000
HKY	15	-3226.1897	6557.9875	0.0000	1.0000
SYM	16	-3227.5715	6567.7917	0.0000	1.0000
GTR	19	-3217.2645	6568.2993	0.0000	1.0000
JC69G	12	-3243.0320	6570.5505	0.0000	1.0000
JC69I	12	-3244.8799	6574.2463	0.0000	1.0000
JC69IG	13	-3243.0046	6577.5363	0.0000	1.0000
F81G	15	-3236.8388	6579.2857	0.0000	1.0000
F81I	15	-3238.7186	6583.0453	0.0000	1.0000
F81IG	16	-3236.8152	6586.2789	0.0000	1.0000
JC69	11	-3266.7944	6611.0346	0.0000	1.0000
F81	14	-3260.4035	6619.3745	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_6328.phylip = 1 - 1142;
 Partition Dummy = 1:591-tomodel-phylip/chr9_6328.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_6328.phylip = 1 - 1142;
 Partition Dummy = 1:591-tomodel-phylip/chr9_6328.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_6328.phylip = 1 - 1142;
 Partition Dummy = 1:591-tomodel-phylip/chr9_6328.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

