
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:54 04/04/2011

Input data from file "591-tomodel-phylip/chr9_393.phylip" (7 taxa, 704 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYG	16	-2606.8962	5246.5843	0.5463	0.5463
HKYIG	17	-2606.9103	5248.7128	0.1885	0.7347
HKYI	16	-2608.3492	5249.4902	0.1278	0.8625
GTRG	20	-2604.4831	5250.1961	0.0898	0.9522
GTRIG	21	-2604.4917	5252.3382	0.0308	0.9830
GTRI	20	-2606.1471	5253.5240	0.0170	1.0000
HKY	15	-2628.6888	5288.0752	0.0000	1.0000
GTR	19	-2625.5146	5290.1403	0.0000	1.0000
SYMG	17	-2638.7029	5312.2979	0.0000	1.0000
SYMIG	18	-2638.7029	5314.4044	0.0000	1.0000
SYMI	17	-2641.4888	5317.8698	0.0000	1.0000
K2PG	13	-2647.1427	5320.8129	0.0000	1.0000
K2PIG	14	-2647.1537	5322.9171	0.0000	1.0000
K2PI	13	-2649.1556	5324.8387	0.0000	1.0000
F81G	15	-2649.6933	5330.0842	0.0000	1.0000
F81IG	16	-2649.6933	5332.1784	0.0000	1.0000
F81I	15	-2651.8357	5334.3690	0.0000	1.0000
SYM	16	-2659.3102	5351.4122	0.0000	1.0000
K2P	12	-2667.5506	5359.5528	0.0000	1.0000
F81	14	-2670.2837	5369.1770	0.0000	1.0000
JC69G	12	-2686.4556	5397.3628	0.0000	1.0000
JC69IG	13	-2686.4556	5399.4387	0.0000	1.0000
JC69I	12	-2688.8912	5402.2339	0.0000	1.0000
JC69	11	-2706.3417	5435.0650	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-2606.8962	5245.7925	0.5223	0.5223
HKYIG	17	-2606.9103	5247.8206	0.1895	0.7118
HKYI	16	-2608.3492	5248.6984	0.1222	0.8339
GTRG	20	-2604.4831	5248.9662	0.1068	0.9408
GTRIG	21	-2604.4917	5250.9834	0.0390	0.9798
GTRI	20	-2606.1471	5252.2941	0.0202	1.0000
HKY	15	-2628.6888	5287.3775	0.0000	1.0000
GTR	19	-2625.5146	5289.0292	0.0000	1.0000
SYMG	17	-2638.7029	5311.4058	0.0000	1.0000
SYMIG	18	-2638.7029	5313.4058	0.0000	1.0000
SYMI	17	-2641.4888	5316.9777	0.0000	1.0000
K2PG	13	-2647.1427	5320.2854	0.0000	1.0000
K2PIG	14	-2647.1537	5322.3075	0.0000	1.0000
K2PI	13	-2649.1556	5324.3112	0.0000	1.0000
F81G	15	-2649.6933	5329.3865	0.0000	1.0000
F81IG	16	-2649.6933	5331.3865	0.0000	1.0000
F81I	15	-2651.8357	5333.6714	0.0000	1.0000
SYM	16	-2659.3102	5350.6204	0.0000	1.0000
K2P	12	-2667.5506	5359.1013	0.0000	1.0000
F81	14	-2670.2837	5368.5675	0.0000	1.0000
JC69G	12	-2686.4556	5396.9113	0.0000	1.0000
JC69IG	13	-2686.4556	5398.9112	0.0000	1.0000
JC69I	12	-2688.8912	5401.7824	0.0000	1.0000
JC69	11	-2706.3417	5434.6835	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2606.8962	5318.7009	0.7867	0.7867
HKYI	16	-2608.3492	5321.6068	0.1840	0.9707
HKYIG	17	-2606.9103	5325.2859	0.0292	1.0000
GTRG	20	-2604.4831	5340.1018	0.0000	1.0000
GTRI	20	-2606.1471	5343.4297	0.0000	1.0000
GTRIG	21	-2604.4917	5346.6757	0.0000	1.0000
HKY	15	-2628.6888	5355.7292	0.0000	1.0000
GTR	19	-2625.5146	5375.6079	0.0000	1.0000
K2PG	13	-2647.1427	5379.5235	0.0000	1.0000
K2PI	13	-2649.1556	5383.5493	0.0000	1.0000
K2PIG	14	-2647.1537	5386.1024	0.0000	1.0000
SYMG	17	-2638.7029	5388.8711	0.0000	1.0000
SYMI	17	-2641.4888	5394.4429	0.0000	1.0000
SYMIG	18	-2638.7029	5395.4279	0.0000	1.0000
F81G	15	-2649.6933	5397.7382	0.0000	1.0000
F81I	15	-2651.8357	5402.0230	0.0000	1.0000
F81IG	16	-2649.6933	5404.2950	0.0000	1.0000
K2P	12	-2667.5506	5413.7826	0.0000	1.0000
SYM	16	-2659.3102	5423.5288	0.0000	1.0000
F81	14	-2670.2837	5432.3624	0.0000	1.0000
JC69G	12	-2686.4556	5451.5926	0.0000	1.0000
JC69I	12	-2688.8912	5456.4637	0.0000	1.0000
JC69IG	13	-2686.4556	5458.1493	0.0000	1.0000
JC69	11	-2706.3417	5484.8080	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_393.phylip = 1 - 704;
 Partition Dummy = 1:591-tomodel-phylip/chr9_393.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_393.phylip = 1 - 704;
 Partition Dummy = 1:591-tomodel-phylip/chr9_393.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_393.phylip = 1 - 704;
 Partition Dummy = 1:591-tomodel-phylip/chr9_393.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

