
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:53 04/04/2011

Input data from file "591-tomodel-phylip/chr9_3638.phylip" (7 taxa, 376 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-910.1930	1862.7521	0.4413	0.4413
GTRI	20	-910.4474	1863.2610	0.3421	0.7834
GTRIG	21	-910.1588	1864.9278	0.1487	0.9321
HKYG	16	-917.2496	1868.0146	0.0318	0.9638
HKYI	16	-917.5840	1868.6834	0.0227	0.9866
HKYIG	17	-917.1914	1870.0923	0.0112	0.9978
GTR	19	-916.8175	1873.7698	0.0018	0.9996
SYMG	17	-921.8002	1879.3098	0.0001	0.9997
HKY	15	-924.0234	1879.3802	0.0001	0.9998
SYMI	17	-922.1781	1880.0658	0.0001	0.9999
SYMIG	18	-921.7423	1881.4005	0.0000	0.9999
K2PG	13	-927.3687	1881.7429	0.0000	1.0000
K2PI	13	-927.7528	1882.5111	0.0000	1.0000
K2PIG	14	-927.2945	1883.7524	0.0000	1.0000
SYM	16	-928.3107	1890.1367	0.0000	1.0000
K2P	12	-934.1561	1893.1718	0.0000	1.0000
F81G	15	-938.1562	1907.6457	0.0000	1.0000
F81I	15	-938.5578	1908.4489	0.0000	1.0000
F81IG	16	-938.0847	1909.6847	0.0000	1.0000
JC69G	12	-946.6741	1918.2077	0.0000	1.0000
F81	14	-944.6715	1918.5065	0.0000	1.0000
JC69I	12	-947.1001	1919.0597	0.0000	1.0000
JC69IG	13	-946.5955	1920.1965	0.0000	1.0000
JC69	11	-953.2168	1929.1589	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-910.1930	1860.3859	0.4426	0.4426
GTRI	20	-910.4474	1860.8948	0.3432	0.7858
GTRIG	21	-910.1588	1862.3176	0.1685	0.9543
HKYG	16	-917.2496	1866.4993	0.0208	0.9751
HKYI	16	-917.5840	1867.1680	0.0149	0.9900
HKYIG	17	-917.1914	1868.3828	0.0081	0.9981
GTR	19	-916.8175	1871.6350	0.0016	0.9997
SYMG	17	-921.8002	1877.6003	0.0001	0.9998
HKY	15	-924.0234	1878.0469	0.0001	0.9999
SYMI	17	-922.1781	1878.3563	0.0001	0.9999
SYMIG	18	-921.7423	1879.4845	0.0000	1.0000
K2PG	13	-927.3687	1880.7373	0.0000	1.0000
K2PI	13	-927.7528	1881.5056	0.0000	1.0000
K2PIG	14	-927.2945	1882.5889	0.0000	1.0000
SYM	16	-928.3107	1888.6214	0.0000	1.0000
K2P	12	-934.1561	1892.3123	0.0000	1.0000
F81G	15	-938.1562	1906.3124	0.0000	1.0000
F81I	15	-938.5578	1907.1155	0.0000	1.0000
F81IG	16	-938.0847	1908.1693	0.0000	1.0000
F81	14	-944.6715	1917.3430	0.0000	1.0000
JC69G	12	-946.6741	1917.3482	0.0000	1.0000
JC69I	12	-947.1001	1918.2002	0.0000	1.0000
JC69IG	13	-946.5955	1919.1910	0.0000	1.0000
JC69	11	-953.2168	1928.4336	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-917.2496	1929.3727	0.4300	0.4300
HKYI	16	-917.5840	1930.0415	0.3078	0.7378
K2PG	13	-927.3687	1931.8220	0.1264	0.8642
K2PI	13	-927.7528	1932.5902	0.0861	0.9502
HKYIG	17	-917.1914	1935.1858	0.0235	0.9737
HKY	15	-924.0234	1936.9907	0.0095	0.9833
K2PIG	14	-927.2945	1937.6032	0.0070	0.9903
GTRG	20	-910.1930	1938.9777	0.0035	0.9938
K2P	12	-934.1561	1939.4673	0.0028	0.9966
GTRI	20	-910.4474	1939.4866	0.0027	0.9993
SYMG	17	-921.8002	1944.4033	0.0002	0.9995
GTRIG	21	-910.1588	1944.8390	0.0002	0.9997
SYMI	17	-922.1781	1945.1593	0.0002	0.9999
GTR	19	-916.8175	1946.2972	0.0001	1.0000
SYMIG	18	-921.7423	1950.2171	0.0000	1.0000
SYM	16	-928.3107	1951.4948	0.0000	1.0000
JC69G	12	-946.6741	1964.5033	0.0000	1.0000
F81G	15	-938.1562	1965.2562	0.0000	1.0000
JC69I	12	-947.1001	1965.3553	0.0000	1.0000
F81I	15	-938.5578	1966.0594	0.0000	1.0000
JC69IG	13	-946.5955	1970.2756	0.0000	1.0000
F81IG	16	-938.0847	1971.0428	0.0000	1.0000
JC69	11	-953.2168	1971.6591	0.0000	1.0000
F81	14	-944.6715	1972.3573	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_3638.phylip = 1 - 376;
 Partition Dummy = 1:591-tomodel-phylip/chr9_3638.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_3638.phylip = 1 - 376;
 Partition Dummy = 1:591-tomodel-phylip/chr9_3638.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr9_3638.phylip = 1 - 376;
 Partition Dummy = 1:591-tomodel-phylip/chr9_3638.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

