
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:52 04/04/2011

Input data from file "591-tomodel-phylip/chr8_9173.phylip" (7 taxa, 492 characters)

Minimum AIC  model: HKYI
Minimum AICc model: HKYI
Minimum BIC  model: HKYI


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYI	16	-1395.2223	2823.5899	0.5054	0.5054
HKYG	16	-1395.7597	2824.6647	0.2953	0.8007
HKYIG	17	-1395.2321	2825.7553	0.1712	0.9719
GTRI	20	-1394.4860	2830.7554	0.0141	0.9859
GTRG	20	-1394.9354	2831.6542	0.0090	0.9949
GTRIG	21	-1394.4935	2832.9530	0.0047	0.9996
HKY	15	-1403.4383	2837.8851	0.0004	1.0000
GTR	19	-1402.2597	2844.1296	0.0000	1.0000
F81I	15	-1413.1817	2857.3719	0.0000	1.0000
F81G	15	-1413.8780	2858.7643	0.0000	1.0000
F81IG	16	-1413.1971	2859.5395	0.0000	1.0000
F81	14	-1420.7462	2870.3730	0.0000	1.0000
K2PI	13	-1423.3886	2873.5387	0.0000	1.0000
K2PG	13	-1423.9933	2874.7482	0.0000	1.0000
K2PIG	14	-1423.4005	2875.6814	0.0000	1.0000
SYMI	17	-1420.2629	2875.8170	0.0000	1.0000
SYMG	17	-1420.7890	2876.8691	0.0000	1.0000
SYMIG	18	-1420.2721	2877.9902	0.0000	1.0000
K2P	12	-1430.6686	2885.9886	0.0000	1.0000
SYM	16	-1427.2197	2887.5848	0.0000	1.0000
JC69I	12	-1437.7588	2900.1689	0.0000	1.0000
JC69G	12	-1438.4601	2901.5716	0.0000	1.0000
JC69IG	13	-1437.7741	2902.3098	0.0000	1.0000
JC69	11	-1444.7965	2912.1429	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYI	16	-1395.2223	2822.4447	0.4936	0.4936
HKYG	16	-1395.7597	2823.5194	0.2884	0.7820
HKYIG	17	-1395.2321	2824.4642	0.1798	0.9618
GTRI	20	-1394.4860	2828.9720	0.0189	0.9807
GTRG	20	-1394.9354	2829.8708	0.0120	0.9927
GTRIG	21	-1394.4935	2830.9870	0.0069	0.9996
HKY	15	-1403.4383	2836.8767	0.0004	1.0000
GTR	19	-1402.2597	2842.5194	0.0000	1.0000
F81I	15	-1413.1817	2856.3635	0.0000	1.0000
F81G	15	-1413.8780	2857.7559	0.0000	1.0000
F81IG	16	-1413.1971	2858.3942	0.0000	1.0000
F81	14	-1420.7462	2869.4925	0.0000	1.0000
K2PI	13	-1423.3886	2872.7772	0.0000	1.0000
K2PG	13	-1423.9933	2873.9867	0.0000	1.0000
SYMI	17	-1420.2629	2874.5259	0.0000	1.0000
K2PIG	14	-1423.4005	2874.8009	0.0000	1.0000
SYMG	17	-1420.7890	2875.5780	0.0000	1.0000
SYMIG	18	-1420.2721	2876.5441	0.0000	1.0000
K2P	12	-1430.6686	2885.3372	0.0000	1.0000
SYM	16	-1427.2197	2886.4395	0.0000	1.0000
JC69I	12	-1437.7588	2899.5176	0.0000	1.0000
JC69G	12	-1438.4601	2900.9203	0.0000	1.0000
JC69IG	13	-1437.7741	2901.5483	0.0000	1.0000
JC69	11	-1444.7965	2911.5929	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-1395.2223	2889.6203	0.6116	0.6116
HKYG	16	-1395.7597	2890.6951	0.3574	0.9690
HKYIG	17	-1395.2321	2895.8383	0.0273	0.9963
HKY	15	-1403.4383	2899.8538	0.0037	1.0000
GTRI	20	-1394.4860	2912.9416	0.0000	1.0000
GTRG	20	-1394.9354	2913.8403	0.0000	1.0000
GTRIG	21	-1394.4935	2919.1551	0.0000	1.0000
F81I	15	-1413.1817	2919.3406	0.0000	1.0000
F81G	15	-1413.8780	2920.7331	0.0000	1.0000
GTR	19	-1402.2597	2922.2905	0.0000	1.0000
F81IG	16	-1413.1971	2925.5699	0.0000	1.0000
K2PI	13	-1423.3886	2927.3575	0.0000	1.0000
F81	14	-1420.7462	2928.2712	0.0000	1.0000
K2PG	13	-1423.9933	2928.5669	0.0000	1.0000
K2PIG	14	-1423.4005	2933.5796	0.0000	1.0000
K2P	12	-1430.6686	2935.7189	0.0000	1.0000
SYMI	17	-1420.2629	2945.9000	0.0000	1.0000
SYMG	17	-1420.7890	2946.9521	0.0000	1.0000
JC69I	12	-1437.7588	2949.8993	0.0000	1.0000
JC69G	12	-1438.4601	2951.3020	0.0000	1.0000
SYMIG	18	-1420.2721	2952.1167	0.0000	1.0000
SYM	16	-1427.2197	2953.6152	0.0000	1.0000
JC69IG	13	-1437.7741	2956.1285	0.0000	1.0000
JC69	11	-1444.7965	2957.7762	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_9173.phylip = 1 - 492;
 Partition Dummy = 1:591-tomodel-phylip/chr8_9173.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_9173.phylip = 1 - 492;
 Partition Dummy = 1:591-tomodel-phylip/chr8_9173.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_9173.phylip = 1 - 492;
 Partition Dummy = 1:591-tomodel-phylip/chr8_9173.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

