
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:51 04/04/2011

Input data from file "591-tomodel-phylip/chr8_8942.phylip" (7 taxa, 1133 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2830.4091	5700.8181	0.5656	0.5656
GTRIG	21	-2830.3100	5702.6200	0.2297	0.7954
GTRI	20	-2831.9079	5703.8159	0.1263	0.9217
HKYG	16	-2836.8504	5705.7007	0.0492	0.9709
HKYIG	17	-2836.7373	5707.4746	0.0203	0.9912
HKYI	16	-2838.5741	5709.1482	0.0088	1.0000
GTR	19	-2846.9626	5731.9252	0.0000	1.0000
HKY	15	-2858.8355	5747.6709	0.0000	1.0000
SYMG	17	-2866.6656	5767.3312	0.0000	1.0000
SYMIG	18	-2866.6192	5769.2384	0.0000	1.0000
SYMI	17	-2867.9713	5769.9425	0.0000	1.0000
K2PG	13	-2873.6069	5773.2138	0.0000	1.0000
K2PIG	14	-2873.5403	5775.0806	0.0000	1.0000
K2PI	13	-2878.1672	5782.3345	0.0000	1.0000
F81G	15	-2877.8572	5785.7145	0.0000	1.0000
F81IG	16	-2877.7537	5787.5074	0.0000	1.0000
F81I	15	-2879.2854	5788.5709	0.0000	1.0000
SYM	16	-2882.6631	5797.3263	0.0000	1.0000
K2P	12	-2893.2212	5810.4424	0.0000	1.0000
F81	14	-2895.1188	5818.2376	0.0000	1.0000
JC69G	12	-2909.3306	5842.6612	0.0000	1.0000
JC69IG	13	-2909.2566	5844.5133	0.0000	1.0000
JC69I	12	-2910.6725	5845.3450	0.0000	1.0000
JC69	11	-2925.6596	5873.3192	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2836.8504	5786.2227	0.8249	0.8249
HKYI	16	-2838.5741	5789.6702	0.1472	0.9721
HKYIG	17	-2836.7373	5793.0292	0.0274	0.9995
GTRG	20	-2830.4091	5801.4706	0.0004	0.9999
GTRI	20	-2831.9079	5804.4684	0.0001	1.0000
GTRIG	21	-2830.3100	5808.3051	0.0000	1.0000
HKY	15	-2858.8355	5823.1603	0.0000	1.0000
GTR	19	-2846.9626	5827.5451	0.0000	1.0000
K2PG	13	-2873.6069	5838.6379	0.0000	1.0000
K2PIG	14	-2873.5403	5845.5374	0.0000	1.0000
K2PI	13	-2878.1672	5847.7586	0.0000	1.0000
SYMG	17	-2866.6656	5852.8858	0.0000	1.0000
SYMI	17	-2867.9713	5855.4971	0.0000	1.0000
SYMIG	18	-2866.6192	5859.8256	0.0000	1.0000
F81G	15	-2877.8572	5861.2038	0.0000	1.0000
F81I	15	-2879.2854	5864.0603	0.0000	1.0000
F81IG	16	-2877.7537	5868.0294	0.0000	1.0000
K2P	12	-2893.2212	5870.8339	0.0000	1.0000
SYM	16	-2882.6631	5877.8483	0.0000	1.0000
F81	14	-2895.1188	5888.6944	0.0000	1.0000
JC69G	12	-2909.3306	5903.0527	0.0000	1.0000
JC69I	12	-2910.6725	5905.7365	0.0000	1.0000
JC69IG	13	-2909.2566	5909.9374	0.0000	1.0000
JC69	11	-2925.6596	5928.6780	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_8942.phylip = 1 - 1133;
 Partition Dummy = 1:591-tomodel-phylip/chr8_8942.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_8942.phylip = 1 - 1133;
 Partition Dummy = 1:591-tomodel-phylip/chr8_8942.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_8942.phylip = 1 - 1133;
 Partition Dummy = 1:591-tomodel-phylip/chr8_8942.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

