
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:50 04/04/2011

Input data from file "591-tomodel-phylip/chr8_7531.phylip" (7 taxa, 715 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2257.1406	4555.4916	0.5026	0.5026
HKYG	16	-2262.2991	4557.3776	0.1957	0.6983
GTRIG	21	-2257.1404	4557.6142	0.1739	0.8722
HKYIG	17	-2262.2990	4559.4760	0.0685	0.9407
GTRI	20	-2259.5637	4560.3378	0.0446	0.9853
HKYI	16	-2264.8856	4562.5506	0.0147	1.0000
GTR	19	-2273.7565	4586.6065	0.0000	1.0000
HKY	15	-2279.3933	4589.4733	0.0000	1.0000
K2PG	13	-2302.6685	4631.8563	0.0000	1.0000
K2PIG	14	-2302.6684	4633.9369	0.0000	1.0000
F81G	15	-2302.6609	4636.0086	0.0000	1.0000
K2PI	13	-2305.3766	4637.2725	0.0000	1.0000
SYMG	17	-2301.3064	4637.4909	0.0000	1.0000
F81IG	16	-2302.6647	4638.1087	0.0000	1.0000
SYMIG	18	-2301.3063	4639.5954	0.0000	1.0000
F81I	15	-2305.0357	4640.7582	0.0000	1.0000
SYMI	17	-2303.9893	4642.8567	0.0000	1.0000
K2P	12	-2318.6514	4661.7473	0.0000	1.0000
F81	14	-2316.9932	4662.5865	0.0000	1.0000
SYM	16	-2317.2508	4667.2809	0.0000	1.0000
JC69G	12	-2335.4346	4695.3136	0.0000	1.0000
JC69IG	13	-2335.4382	4697.3956	0.0000	1.0000
JC69I	12	-2337.8763	4700.1970	0.0000	1.0000
JC69	11	-2349.5426	4721.4608	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2257.1406	4554.2812	0.5236	0.5236
GTRIG	21	-2257.1404	4556.2809	0.1927	0.7163
HKYG	16	-2262.2991	4556.5983	0.1644	0.8807
HKYIG	17	-2262.2990	4558.5979	0.0605	0.9412
GTRI	20	-2259.5637	4559.1274	0.0464	0.9876
HKYI	16	-2264.8856	4561.7712	0.0124	1.0000
GTR	19	-2273.7565	4585.5130	0.0000	1.0000
HKY	15	-2279.3933	4588.7866	0.0000	1.0000
K2PG	13	-2302.6685	4631.3370	0.0000	1.0000
K2PIG	14	-2302.6684	4633.3369	0.0000	1.0000
F81G	15	-2302.6609	4635.3219	0.0000	1.0000
SYMG	17	-2301.3064	4636.6128	0.0000	1.0000
K2PI	13	-2305.3766	4636.7533	0.0000	1.0000
F81IG	16	-2302.6647	4637.3293	0.0000	1.0000
SYMIG	18	-2301.3063	4638.6127	0.0000	1.0000
F81I	15	-2305.0357	4640.0715	0.0000	1.0000
SYMI	17	-2303.9893	4641.9787	0.0000	1.0000
K2P	12	-2318.6514	4661.3028	0.0000	1.0000
F81	14	-2316.9932	4661.9865	0.0000	1.0000
SYM	16	-2317.2508	4666.5015	0.0000	1.0000
JC69G	12	-2335.4346	4694.8692	0.0000	1.0000
JC69IG	13	-2335.4382	4696.8764	0.0000	1.0000
JC69I	12	-2337.8763	4699.7526	0.0000	1.0000
JC69	11	-2349.5426	4721.0853	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2262.2991	4629.7548	0.8984	0.8984
HKYI	16	-2264.8856	4634.9277	0.0676	0.9661
HKYIG	17	-2262.2990	4636.3267	0.0336	0.9997
GTRG	20	-2257.1406	4645.7269	0.0003	1.0000
GTRI	20	-2259.5637	4650.5731	0.0000	1.0000
GTRIG	21	-2257.1404	4652.2988	0.0000	1.0000
HKY	15	-2279.3933	4657.3708	0.0000	1.0000
GTR	19	-2273.7565	4672.3864	0.0000	1.0000
K2PG	13	-2302.6685	4690.7767	0.0000	1.0000
K2PI	13	-2305.3766	4696.1930	0.0000	1.0000
K2PIG	14	-2302.6684	4697.3488	0.0000	1.0000
F81G	15	-2302.6609	4703.9061	0.0000	1.0000
F81I	15	-2305.0357	4708.6557	0.0000	1.0000
F81IG	16	-2302.6647	4710.4858	0.0000	1.0000
SYMG	17	-2301.3064	4714.3416	0.0000	1.0000
K2P	12	-2318.6514	4716.1702	0.0000	1.0000
SYMI	17	-2303.9893	4719.7075	0.0000	1.0000
SYMIG	18	-2301.3063	4720.9137	0.0000	1.0000
F81	14	-2316.9932	4725.9985	0.0000	1.0000
SYM	16	-2317.2508	4739.6581	0.0000	1.0000
JC69G	12	-2335.4346	4749.7366	0.0000	1.0000
JC69I	12	-2337.8763	4754.6200	0.0000	1.0000
JC69IG	13	-2335.4382	4756.3160	0.0000	1.0000
JC69	11	-2349.5426	4771.3804	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_7531.phylip = 1 - 715;
 Partition Dummy = 1:591-tomodel-phylip/chr8_7531.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_7531.phylip = 1 - 715;
 Partition Dummy = 1:591-tomodel-phylip/chr8_7531.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_7531.phylip = 1 - 715;
 Partition Dummy = 1:591-tomodel-phylip/chr8_7531.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

