
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:49 04/04/2011

Input data from file "591-tomodel-phylip/chr8_7526.phylip" (7 taxa, 1083 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3390.3214	6820.6429	0.6731	0.6731
GTRIG	21	-3390.2768	6822.5535	0.2589	0.9320
GTRI	20	-3392.8025	6825.6050	0.0563	0.9883
HKYG	16	-3398.7549	6829.5099	0.0080	0.9963
HKYIG	17	-3398.6548	6831.3097	0.0032	0.9995
HKYI	16	-3401.5484	6835.0969	0.0005	1.0000
GTR	19	-3428.3448	6894.6895	0.0000	1.0000
HKY	15	-3436.6953	6903.3905	0.0000	1.0000
K2PG	13	-3446.7245	6919.4489	0.0000	1.0000
K2PIG	14	-3446.5128	6921.0256	0.0000	1.0000
SYMG	17	-3444.0356	6922.0711	0.0000	1.0000
SYMIG	18	-3443.8191	6923.6383	0.0000	1.0000
K2PI	13	-3450.1965	6926.3931	0.0000	1.0000
SYMI	17	-3447.4434	6928.8868	0.0000	1.0000
F81G	15	-3454.4304	6938.8607	0.0000	1.0000
F81IG	16	-3454.3555	6940.7109	0.0000	1.0000
F81I	15	-3456.7860	6943.5720	0.0000	1.0000
K2P	12	-3487.4930	6998.9859	0.0000	1.0000
SYM	16	-3484.7238	7001.4476	0.0000	1.0000
F81	14	-3489.8500	7007.7000	0.0000	1.0000
JC69G	12	-3495.9909	7015.9818	0.0000	1.0000
JC69IG	13	-3495.8526	7017.7052	0.0000	1.0000
JC69I	12	-3498.8503	7021.7006	0.0000	1.0000
JC69	11	-3533.4011	7088.8022	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3398.7549	6909.3097	0.9098	0.9098
HKYI	16	-3401.5484	6914.8967	0.0557	0.9655
HKYIG	17	-3398.6548	6916.0970	0.0306	0.9960
GTRG	20	-3390.3214	6920.3927	0.0036	0.9996
GTRI	20	-3392.8025	6925.3548	0.0003	0.9999
GTRIG	21	-3390.2768	6927.2908	0.0001	1.0000
HKY	15	-3436.6953	6978.2029	0.0000	1.0000
K2PG	13	-3446.7245	6984.2863	0.0000	1.0000
GTR	19	-3428.3448	6989.4518	0.0000	1.0000
K2PIG	14	-3446.5128	6990.8505	0.0000	1.0000
K2PI	13	-3450.1965	6991.2304	0.0000	1.0000
SYMG	17	-3444.0356	7006.8585	0.0000	1.0000
SYMIG	18	-3443.8191	7013.4131	0.0000	1.0000
F81G	15	-3454.4304	7013.6731	0.0000	1.0000
SYMI	17	-3447.4434	7013.6741	0.0000	1.0000
F81I	15	-3456.7860	7018.3844	0.0000	1.0000
F81IG	16	-3454.3555	7020.5108	0.0000	1.0000
K2P	12	-3487.4930	7058.8358	0.0000	1.0000
JC69G	12	-3495.9909	7075.8317	0.0000	1.0000
F81	14	-3489.8500	7077.5249	0.0000	1.0000
SYM	16	-3484.7238	7081.2474	0.0000	1.0000
JC69I	12	-3498.8503	7081.5505	0.0000	1.0000
JC69IG	13	-3495.8526	7082.5425	0.0000	1.0000
JC69	11	-3533.4011	7143.6646	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_7526.phylip = 1 - 1083;
 Partition Dummy = 1:591-tomodel-phylip/chr8_7526.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_7526.phylip = 1 - 1083;
 Partition Dummy = 1:591-tomodel-phylip/chr8_7526.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_7526.phylip = 1 - 1083;
 Partition Dummy = 1:591-tomodel-phylip/chr8_7526.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

