
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:53 04/04/2011

Input data from file "591-tomodel-phylip/chr8_4399.phylip" (7 taxa, 653 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1862.1947	3765.7185	0.6066	0.6066
GTRIG	21	-1861.6073	3766.6790	0.3753	0.9819
GTRI	20	-1865.7789	3772.8870	0.0168	0.9987
HKYG	16	-1873.0884	3779.0322	0.0008	0.9995
HKYIG	17	-1872.5566	3780.0770	0.0005	0.9999
HKYI	16	-1875.6161	3784.0875	0.0001	1.0000
GTR	19	-1895.8761	3830.9528	0.0000	1.0000
K2PG	13	-1907.9147	3842.3990	0.0000	1.0000
HKY	15	-1905.9157	3842.5849	0.0000	1.0000
SYMG	17	-1904.1583	3843.2805	0.0000	1.0000
K2PIG	14	-1907.4283	3843.5150	0.0000	1.0000
SYMIG	18	-1903.6641	3844.4070	0.0000	1.0000
K2PI	13	-1909.8500	3846.2696	0.0000	1.0000
F81G	15	-1907.8379	3846.4293	0.0000	1.0000
SYMI	17	-1906.3331	3847.6301	0.0000	1.0000
F81IG	16	-1907.4252	3847.7057	0.0000	1.0000
F81I	15	-1909.8794	3850.5124	0.0000	1.0000
JC69G	12	-1938.8016	3902.0906	0.0000	1.0000
JC69IG	13	-1938.4457	3903.4611	0.0000	1.0000
JC69I	12	-1940.5506	3905.5887	0.0000	1.0000
SYM	16	-1937.0743	3907.0040	0.0000	1.0000
K2P	12	-1942.4407	3909.3689	0.0000	1.0000
F81	14	-1940.9984	3910.6550	0.0000	1.0000
JC69	11	-1971.9376	3966.2871	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1862.1947	3764.3894	0.5912	0.5912
GTRIG	21	-1861.6073	3765.2147	0.3913	0.9826
GTRI	20	-1865.7789	3771.5578	0.0164	0.9990
HKYG	16	-1873.0884	3778.1769	0.0006	0.9996
HKYIG	17	-1872.5566	3779.1132	0.0004	1.0000
HKYI	16	-1875.6161	3783.2322	0.0000	1.0000
GTR	19	-1895.8761	3829.7521	0.0000	1.0000
K2PG	13	-1907.9147	3841.8293	0.0000	1.0000
HKY	15	-1905.9157	3841.8314	0.0000	1.0000
SYMG	17	-1904.1583	3842.3167	0.0000	1.0000
K2PIG	14	-1907.4283	3842.8567	0.0000	1.0000
SYMIG	18	-1903.6641	3843.3282	0.0000	1.0000
F81G	15	-1907.8379	3845.6758	0.0000	1.0000
K2PI	13	-1909.8500	3845.6999	0.0000	1.0000
SYMI	17	-1906.3331	3846.6663	0.0000	1.0000
F81IG	16	-1907.4252	3846.8503	0.0000	1.0000
F81I	15	-1909.8794	3849.7588	0.0000	1.0000
JC69G	12	-1938.8016	3901.6031	0.0000	1.0000
JC69IG	13	-1938.4457	3902.8914	0.0000	1.0000
JC69I	12	-1940.5506	3905.1012	0.0000	1.0000
SYM	16	-1937.0743	3906.1487	0.0000	1.0000
K2P	12	-1942.4407	3908.8814	0.0000	1.0000
F81	14	-1940.9984	3909.9967	0.0000	1.0000
JC69	11	-1971.9376	3965.8752	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1873.0884	3849.8821	0.7781	0.7781
GTRG	20	-1862.1947	3854.0209	0.0982	0.8764
HKYI	16	-1875.6161	3854.9374	0.0621	0.9385
HKYIG	17	-1872.5566	3855.3000	0.0518	0.9904
GTRIG	21	-1861.6073	3859.3278	0.0069	0.9973
GTRI	20	-1865.7789	3861.1894	0.0027	1.0000
K2PG	13	-1907.9147	3900.0898	0.0000	1.0000
K2PI	13	-1909.8500	3903.9604	0.0000	1.0000
K2PIG	14	-1907.4283	3905.5987	0.0000	1.0000
HKY	15	-1905.9157	3909.0550	0.0000	1.0000
F81G	15	-1907.8379	3912.8994	0.0000	1.0000
GTR	19	-1895.8761	3914.9021	0.0000	1.0000
F81I	15	-1909.8794	3916.9825	0.0000	1.0000
SYMG	17	-1904.1583	3918.5035	0.0000	1.0000
F81IG	16	-1907.4252	3918.5556	0.0000	1.0000
SYMI	17	-1906.3331	3922.8531	0.0000	1.0000
SYMIG	18	-1903.6641	3923.9965	0.0000	1.0000
JC69G	12	-1938.8016	3955.3820	0.0000	1.0000
JC69I	12	-1940.5506	3958.8801	0.0000	1.0000
JC69IG	13	-1938.4457	3961.1519	0.0000	1.0000
K2P	12	-1942.4407	3962.6604	0.0000	1.0000
F81	14	-1940.9984	3972.7388	0.0000	1.0000
SYM	16	-1937.0743	3977.8539	0.0000	1.0000
JC69	11	-1971.9376	4015.1725	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_4399.phylip = 1 - 653;
 Partition Dummy = 1:591-tomodel-phylip/chr8_4399.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_4399.phylip = 1 - 653;
 Partition Dummy = 1:591-tomodel-phylip/chr8_4399.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_4399.phylip = 1 - 653;
 Partition Dummy = 1:591-tomodel-phylip/chr8_4399.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

