
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:51 04/04/2011

Input data from file "591-tomodel-phylip/chr8_4125.phylip" (7 taxa, 907 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2607.1624	5254.3248	0.5660	0.5660
GTRI	20	-2608.1114	5256.2229	0.2191	0.7851
GTRIG	21	-2607.1424	5256.2847	0.2124	0.9975
HKYG	16	-2617.2397	5266.4794	0.0013	0.9988
HKYI	16	-2617.8022	5267.6045	0.0007	0.9995
HKYIG	17	-2617.2568	5268.5135	0.0005	1.0000
GTR	19	-2627.6559	5293.3118	0.0000	1.0000
SYMG	17	-2632.9789	5299.9578	0.0000	1.0000
SYMI	17	-2633.4897	5300.9793	0.0000	1.0000
SYMIG	18	-2632.9639	5301.9277	0.0000	1.0000
K2PG	13	-2639.4162	5304.8323	0.0000	1.0000
HKY	15	-2637.6461	5305.2922	0.0000	1.0000
K2PI	13	-2639.7896	5305.5793	0.0000	1.0000
K2PIG	14	-2639.4305	5306.8610	0.0000	1.0000
SYM	16	-2653.9597	5339.9195	0.0000	1.0000
K2P	12	-2660.5331	5345.0662	0.0000	1.0000
F81G	15	-2669.6836	5369.3673	0.0000	1.0000
F81I	15	-2669.7551	5369.5101	0.0000	1.0000
F81IG	16	-2669.7185	5371.4370	0.0000	1.0000
JC69G	12	-2688.4119	5400.8238	0.0000	1.0000
JC69I	12	-2688.4435	5400.8870	0.0000	1.0000
JC69IG	13	-2688.4468	5402.8937	0.0000	1.0000
F81	14	-2688.6165	5405.2330	0.0000	1.0000
JC69	11	-2707.9267	5437.8535	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2617.2397	5343.4416	0.6085	0.6085
HKYI	16	-2617.8022	5344.5668	0.3467	0.9551
HKYIG	17	-2617.2568	5350.2859	0.0199	0.9750
GTRG	20	-2607.1624	5350.5276	0.0176	0.9926
GTRI	20	-2608.1114	5352.4257	0.0068	0.9994
GTRIG	21	-2607.1424	5357.2977	0.0006	1.0000
K2PG	13	-2639.4162	5367.3642	0.0000	1.0000
K2PI	13	-2639.7896	5368.1111	0.0000	1.0000
K2PIG	14	-2639.4305	5374.2030	0.0000	1.0000
HKY	15	-2637.6461	5377.4443	0.0000	1.0000
SYMG	17	-2632.9789	5381.7302	0.0000	1.0000
SYMI	17	-2633.4897	5382.7518	0.0000	1.0000
GTR	19	-2627.6559	5384.7045	0.0000	1.0000
SYMIG	18	-2632.9639	5388.5103	0.0000	1.0000
K2P	12	-2660.5331	5402.7879	0.0000	1.0000
SYM	16	-2653.9597	5416.8817	0.0000	1.0000
F81G	15	-2669.6836	5441.5194	0.0000	1.0000
F81I	15	-2669.7551	5441.6623	0.0000	1.0000
F81IG	16	-2669.7185	5448.3993	0.0000	1.0000
JC69G	12	-2688.4119	5458.5455	0.0000	1.0000
JC69I	12	-2688.4435	5458.6087	0.0000	1.0000
JC69IG	13	-2688.4468	5465.4255	0.0000	1.0000
F81	14	-2688.6165	5472.5750	0.0000	1.0000
JC69	11	-2707.9267	5490.7650	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_4125.phylip = 1 - 907;
 Partition Dummy = 1:591-tomodel-phylip/chr8_4125.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_4125.phylip = 1 - 907;
 Partition Dummy = 1:591-tomodel-phylip/chr8_4125.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_4125.phylip = 1 - 907;
 Partition Dummy = 1:591-tomodel-phylip/chr8_4125.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

