
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:50 04/04/2011

Input data from file "591-tomodel-phylip/chr8_4048.phylip" (7 taxa, 1115 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: SYMI


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2946.3376	5932.6752	0.4298	0.4298
GTRI	20	-2946.3786	5932.7572	0.4125	0.8423
GTRIG	21	-2946.3453	5934.6907	0.1569	0.9992
SYMI	17	-2956.4243	5946.8485	0.0004	0.9996
SYMG	17	-2956.5238	5947.0477	0.0003	0.9999
SYMIG	18	-2956.5467	5949.0933	0.0001	1.0000
HKYG	16	-2963.2331	5958.4661	0.0000	1.0000
HKYI	16	-2963.6310	5959.2620	0.0000	1.0000
HKYIG	17	-2963.2173	5960.4346	0.0000	1.0000
K2PG	13	-2970.7246	5967.4493	0.0000	1.0000
K2PI	13	-2971.0402	5968.0803	0.0000	1.0000
K2PIG	14	-2970.7233	5969.4466	0.0000	1.0000
GTR	19	-2968.5332	5975.0664	0.0000	1.0000
SYM	16	-2977.0801	5986.1602	0.0000	1.0000
HKY	15	-2985.6866	6001.3733	0.0000	1.0000
F81G	15	-2988.1204	6006.2409	0.0000	1.0000
F81I	15	-2988.2254	6006.4507	0.0000	1.0000
F81IG	16	-2988.1243	6008.2485	0.0000	1.0000
K2P	12	-2992.3018	6008.6037	0.0000	1.0000
JC69G	12	-2994.0702	6012.1403	0.0000	1.0000
JC69I	12	-2994.1285	6012.2569	0.0000	1.0000
JC69IG	13	-2994.0803	6014.1607	0.0000	1.0000
F81	14	-3008.9745	6045.9489	0.0000	1.0000
JC69	11	-3014.5595	6051.1191	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
SYMI	17	-2956.4243	6032.1309	0.2162	0.2162
SYMG	17	-2956.5238	6032.3300	0.1957	0.4119
K2PG	13	-2970.7246	6032.6652	0.1655	0.5775
GTRG	20	-2946.3376	6033.0074	0.1395	0.7170
GTRI	20	-2946.3786	6033.0894	0.1339	0.8509
K2PI	13	-2971.0402	6033.2962	0.1207	0.9716
HKYG	16	-2963.2331	6038.7319	0.0080	0.9796
SYMIG	18	-2956.5467	6039.3923	0.0057	0.9853
HKYI	16	-2963.6310	6039.5278	0.0054	0.9906
K2PIG	14	-2970.7233	6039.6792	0.0050	0.9956
GTRIG	21	-2946.3453	6040.0395	0.0041	0.9998
HKYIG	17	-2963.2173	6045.7169	0.0002	1.0000
SYM	16	-2977.0801	6066.4260	0.0000	1.0000
K2P	12	-2992.3018	6068.8030	0.0000	1.0000
GTR	19	-2968.5332	6070.3820	0.0000	1.0000
JC69G	12	-2994.0702	6072.3397	0.0000	1.0000
JC69I	12	-2994.1285	6072.4563	0.0000	1.0000
HKY	15	-2985.6866	6076.6224	0.0000	1.0000
JC69IG	13	-2994.0803	6079.3766	0.0000	1.0000
F81G	15	-2988.1204	6081.4900	0.0000	1.0000
F81I	15	-2988.2254	6081.6999	0.0000	1.0000
F81IG	16	-2988.1243	6088.5143	0.0000	1.0000
JC69	11	-3014.5595	6106.3018	0.0000	1.0000
F81	14	-3008.9745	6116.1815	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_4048.phylip = 1 - 1115;
 Partition Dummy = 1:591-tomodel-phylip/chr8_4048.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_4048.phylip = 1 - 1115;
 Partition Dummy = 1:591-tomodel-phylip/chr8_4048.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (SYMI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_4048.phylip = 1 - 1115;
 Partition Dummy = 1:591-tomodel-phylip/chr8_4048.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Fixed(Equal) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

