
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:50 04/04/2011

Input data from file "591-tomodel-phylip/chr8_3473.phylip" (7 taxa, 965 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3405.1205	6850.2409	0.4880	0.4880
GTRIG	21	-3404.9722	6851.9445	0.2082	0.6962
GTRI	20	-3405.9966	6851.9931	0.2032	0.8994
HKYG	16	-3411.2537	6854.5075	0.0578	0.9572
HKYI	16	-3412.2306	6856.4612	0.0218	0.9790
HKYIG	17	-3411.2666	6856.5332	0.0210	1.0000
GTR	19	-3441.0344	6920.0688	0.0000	1.0000
HKY	15	-3446.1107	6922.2213	0.0000	1.0000
SYMG	17	-3449.5584	6933.1168	0.0000	1.0000
K2PG	13	-3454.3247	6934.6493	0.0000	1.0000
SYMIG	18	-3449.5529	6935.1058	0.0000	1.0000
SYMI	17	-3450.8093	6935.6187	0.0000	1.0000
K2PIG	14	-3454.3343	6936.6686	0.0000	1.0000
K2PI	13	-3455.4170	6936.8339	0.0000	1.0000
F81G	15	-3483.1817	6996.3634	0.0000	1.0000
F81I	15	-3484.0604	6998.1208	0.0000	1.0000
F81IG	16	-3483.1845	6998.3690	0.0000	1.0000
SYM	16	-3485.2642	7002.5284	0.0000	1.0000
K2P	12	-3489.5433	7003.0866	0.0000	1.0000
F81	14	-3516.5716	7061.1433	0.0000	1.0000
JC69G	12	-3518.6854	7061.3709	0.0000	1.0000
JC69I	12	-3519.6253	7063.2505	0.0000	1.0000
JC69IG	13	-3518.6740	7063.3481	0.0000	1.0000
JC69	11	-3552.1071	7126.2141	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3411.2537	6932.4615	0.7097	0.7097
HKYI	16	-3412.2306	6934.4152	0.2672	0.9769
HKYIG	17	-3411.2666	6939.3594	0.0226	0.9995
GTRG	20	-3405.1205	6947.6835	0.0004	0.9998
GTRI	20	-3405.9966	6949.4357	0.0001	1.0000
GTRIG	21	-3404.9722	6954.2592	0.0000	1.0000
HKY	15	-3446.1107	6995.3032	0.0000	1.0000
K2PG	13	-3454.3247	6997.9870	0.0000	1.0000
K2PI	13	-3455.4170	7000.1716	0.0000	1.0000
K2PIG	14	-3454.3343	7004.8784	0.0000	1.0000
GTR	19	-3441.0344	7012.6392	0.0000	1.0000
SYMG	17	-3449.5584	7015.9430	0.0000	1.0000
SYMI	17	-3450.8093	7018.4449	0.0000	1.0000
SYMIG	18	-3449.5529	7022.8041	0.0000	1.0000
K2P	12	-3489.5433	7061.5522	0.0000	1.0000
F81G	15	-3483.1817	7069.4453	0.0000	1.0000
F81I	15	-3484.0604	7071.2027	0.0000	1.0000
F81IG	16	-3483.1845	7076.3231	0.0000	1.0000
SYM	16	-3485.2642	7080.4825	0.0000	1.0000
JC69G	12	-3518.6854	7119.8364	0.0000	1.0000
JC69I	12	-3519.6253	7121.7161	0.0000	1.0000
JC69IG	13	-3518.6740	7126.6857	0.0000	1.0000
F81	14	-3516.5716	7129.3531	0.0000	1.0000
JC69	11	-3552.1071	7179.8075	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_3473.phylip = 1 - 965;
 Partition Dummy = 1:591-tomodel-phylip/chr8_3473.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_3473.phylip = 1 - 965;
 Partition Dummy = 1:591-tomodel-phylip/chr8_3473.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_3473.phylip = 1 - 965;
 Partition Dummy = 1:591-tomodel-phylip/chr8_3473.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

