
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:50 04/04/2011

Input data from file "591-tomodel-phylip/chr8_3358.phylip" (7 taxa, 487 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1480.3514	3002.5055	0.6221	0.6221
GTRIG	21	-1480.3502	3004.6874	0.2090	0.8311
GTRI	20	-1481.7142	3005.2310	0.1592	0.9903
HKYG	16	-1489.4410	3012.0395	0.0053	0.9956
HKYI	16	-1490.4573	3014.0721	0.0019	0.9975
HKYIG	17	-1489.4318	3014.1685	0.0018	0.9993
GTR	19	-1488.2675	3016.1623	0.0007	1.0000
HKY	15	-1498.3646	3027.7482	0.0000	1.0000
F81G	15	-1515.1872	3061.3935	0.0000	1.0000
F81I	15	-1516.1048	3063.2286	0.0000	1.0000
F81IG	16	-1515.1775	3063.5125	0.0000	1.0000
K2PG	13	-1520.7873	3068.3441	0.0000	1.0000
K2PI	13	-1521.8086	3070.3867	0.0000	1.0000
K2PIG	14	-1520.7578	3070.4055	0.0000	1.0000
SYMG	17	-1518.1385	3071.5819	0.0000	1.0000
SYMIG	18	-1518.1164	3073.6943	0.0000	1.0000
SYMI	17	-1519.1990	3073.7030	0.0000	1.0000
F81	14	-1524.2407	3077.3712	0.0000	1.0000
K2P	12	-1531.6108	3087.8797	0.0000	1.0000
SYM	16	-1528.3624	3089.8822	0.0000	1.0000
JC69G	12	-1542.3215	3109.3012	0.0000	1.0000
JC69I	12	-1543.2845	3111.2273	0.0000	1.0000
JC69IG	13	-1542.3026	3111.3747	0.0000	1.0000
JC69	11	-1552.5235	3127.6028	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1480.3514	3000.7029	0.6113	0.6113
GTRIG	21	-1480.3502	3002.7003	0.2252	0.8364
GTRI	20	-1481.7142	3003.4284	0.1565	0.9929
HKYG	16	-1489.4410	3010.8820	0.0038	0.9966
HKYIG	17	-1489.4318	3012.8636	0.0014	0.9980
HKYI	16	-1490.4573	3012.9146	0.0014	0.9994
GTR	19	-1488.2675	3014.5349	0.0006	1.0000
HKY	15	-1498.3646	3026.7291	0.0000	1.0000
F81G	15	-1515.1872	3060.3744	0.0000	1.0000
F81I	15	-1516.1048	3062.2095	0.0000	1.0000
F81IG	16	-1515.1775	3062.3551	0.0000	1.0000
K2PG	13	-1520.7873	3067.5746	0.0000	1.0000
K2PIG	14	-1520.7578	3069.5157	0.0000	1.0000
K2PI	13	-1521.8086	3069.6172	0.0000	1.0000
SYMG	17	-1518.1385	3070.2770	0.0000	1.0000
SYMIG	18	-1518.1164	3072.2328	0.0000	1.0000
SYMI	17	-1519.1990	3072.3981	0.0000	1.0000
F81	14	-1524.2407	3076.4814	0.0000	1.0000
K2P	12	-1531.6108	3087.2215	0.0000	1.0000
SYM	16	-1528.3624	3088.7248	0.0000	1.0000
JC69G	12	-1542.3215	3108.6430	0.0000	1.0000
JC69I	12	-1543.2845	3110.5691	0.0000	1.0000
JC69IG	13	-1542.3026	3110.6051	0.0000	1.0000
JC69	11	-1552.5235	3127.0470	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1489.4410	3077.8943	0.6852	0.6852
HKYI	16	-1490.4573	3079.9269	0.2480	0.9331
HKYIG	17	-1489.4318	3084.0641	0.0313	0.9645
GTRG	20	-1480.3514	3084.4682	0.0256	0.9901
GTRI	20	-1481.7142	3087.1937	0.0066	0.9966
HKY	15	-1498.3646	3089.5531	0.0020	0.9986
GTRIG	21	-1480.3502	3090.6539	0.0012	0.9998
GTR	19	-1488.2675	3094.1119	0.0002	1.0000
K2PG	13	-1520.7873	3122.0220	0.0000	1.0000
F81G	15	-1515.1872	3123.1983	0.0000	1.0000
K2PI	13	-1521.8086	3124.0646	0.0000	1.0000
F81I	15	-1516.1048	3125.0335	0.0000	1.0000
K2PIG	14	-1520.7578	3128.1514	0.0000	1.0000
F81IG	16	-1515.1775	3129.3673	0.0000	1.0000
F81	14	-1524.2407	3135.1171	0.0000	1.0000
K2P	12	-1531.6108	3137.4807	0.0000	1.0000
SYMG	17	-1518.1385	3141.4775	0.0000	1.0000
SYMI	17	-1519.1990	3143.5986	0.0000	1.0000
SYMIG	18	-1518.1164	3147.6216	0.0000	1.0000
SYM	16	-1528.3624	3155.7370	0.0000	1.0000
JC69G	12	-1542.3215	3158.9022	0.0000	1.0000
JC69I	12	-1543.2845	3160.8282	0.0000	1.0000
JC69IG	13	-1542.3026	3165.0525	0.0000	1.0000
JC69	11	-1552.5235	3173.1179	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_3358.phylip = 1 - 487;
 Partition Dummy = 1:591-tomodel-phylip/chr8_3358.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_3358.phylip = 1 - 487;
 Partition Dummy = 1:591-tomodel-phylip/chr8_3358.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_3358.phylip = 1 - 487;
 Partition Dummy = 1:591-tomodel-phylip/chr8_3358.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

