
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:54 04/04/2011

Input data from file "591-tomodel-phylip/chr8_1574.phylip" (7 taxa, 1139 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-4327.3979	8694.7957	0.7239	0.7239
GTRIG	21	-4327.3980	8696.7960	0.2663	0.9902
GTRI	20	-4332.2625	8704.5251	0.0056	0.9957
SYMG	17	-4335.8794	8705.7587	0.0030	0.9987
SYMIG	18	-4335.8797	8707.7593	0.0011	0.9999
HKYG	16	-4340.5017	8713.0034	0.0001	0.9999
SYMI	17	-4340.4762	8714.9524	0.0000	1.0000
HKYIG	17	-4340.5020	8715.0040	0.0000	1.0000
K2PG	13	-4347.8853	8721.7707	0.0000	1.0000
HKYI	16	-4345.5219	8723.0438	0.0000	1.0000
K2PIG	14	-4347.8856	8723.7712	0.0000	1.0000
K2PI	13	-4352.8528	8731.7057	0.0000	1.0000
GTR	19	-4351.0784	8740.1569	0.0000	1.0000
SYM	16	-4358.3657	8748.7314	0.0000	1.0000
HKY	15	-4363.9983	8757.9967	0.0000	1.0000
K2P	12	-4371.3132	8766.6265	0.0000	1.0000
F81G	15	-4424.5845	8879.1690	0.0000	1.0000
F81IG	16	-4424.5848	8881.1697	0.0000	1.0000
F81I	15	-4428.9020	8887.8040	0.0000	1.0000
JC69G	12	-4432.2688	8888.5376	0.0000	1.0000
JC69IG	13	-4432.2690	8890.5381	0.0000	1.0000
JC69I	12	-4436.6184	8897.2369	0.0000	1.0000
F81	14	-4446.4108	8920.8216	0.0000	1.0000
JC69	11	-4453.5862	8929.1725	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-4347.8853	8787.2635	0.8146	0.8146
SYMG	17	-4335.8794	8791.4031	0.1028	0.9174
HKYG	16	-4340.5017	8793.6099	0.0341	0.9515
K2PIG	14	-4347.8856	8794.3019	0.0241	0.9756
GTRG	20	-4327.3979	8795.5538	0.0129	0.9885
K2PI	13	-4352.8528	8797.1985	0.0057	0.9942
SYMIG	18	-4335.8797	8798.4416	0.0030	0.9972
SYMI	17	-4340.4762	8800.5968	0.0010	0.9983
HKYIG	17	-4340.5020	8800.6484	0.0010	0.9993
GTRIG	21	-4327.3980	8802.5920	0.0004	0.9997
HKYI	16	-4345.5219	8803.6503	0.0002	0.9999
GTRI	20	-4332.2625	8805.2832	0.0001	1.0000
K2P	12	-4371.3132	8827.0814	0.0000	1.0000
SYM	16	-4358.3657	8829.3379	0.0000	1.0000
HKY	15	-4363.9983	8833.5653	0.0000	1.0000
GTR	19	-4351.0784	8835.8771	0.0000	1.0000
JC69G	12	-4432.2688	8948.9925	0.0000	1.0000
F81G	15	-4424.5845	8954.7376	0.0000	1.0000
JC69IG	13	-4432.2690	8956.0309	0.0000	1.0000
JC69I	12	-4436.6184	8957.6917	0.0000	1.0000
F81IG	16	-4424.5848	8961.7762	0.0000	1.0000
F81I	15	-4428.9020	8963.3725	0.0000	1.0000
JC69	11	-4453.5862	8984.5894	0.0000	1.0000
F81	14	-4446.4108	8991.3523	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_1574.phylip = 1 - 1139;
 Partition Dummy = 1:591-tomodel-phylip/chr8_1574.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_1574.phylip = 1 - 1139;
 Partition Dummy = 1:591-tomodel-phylip/chr8_1574.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_1574.phylip = 1 - 1139;
 Partition Dummy = 1:591-tomodel-phylip/chr8_1574.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

