
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:53 04/04/2011

Input data from file "591-tomodel-phylip/chr8_141.phylip" (7 taxa, 788 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2931.8957	5904.8865	0.5426	0.5426
GTRI	20	-2932.6491	5906.3933	0.2554	0.7981
GTRIG	21	-2931.8929	5906.9921	0.1894	0.9874
HKYG	16	-2940.4347	5913.5749	0.0070	0.9945
HKYI	16	-2941.2644	5915.2344	0.0031	0.9975
HKYIG	17	-2940.4401	5915.6751	0.0025	1.0000
GTR	19	-2949.0231	5937.0358	0.0000	1.0000
HKY	15	-2957.9790	5946.5797	0.0000	1.0000
K2PG	13	-2985.1072	5996.6847	0.0000	1.0000
K2PIG	14	-2985.1089	5998.7611	0.0000	1.0000
K2PI	13	-2986.7332	5999.9366	0.0000	1.0000
SYMG	17	-2984.4669	6003.7287	0.0000	1.0000
SYMIG	18	-2984.4685	6005.8264	0.0000	1.0000
SYMI	17	-2986.1034	6007.0016	0.0000	1.0000
F81G	15	-3001.6253	6033.8724	0.0000	1.0000
F81I	15	-3002.3038	6035.2295	0.0000	1.0000
F81IG	16	-3001.6277	6035.9610	0.0000	1.0000
K2P	12	-3005.8529	6036.1084	0.0000	1.0000
SYM	16	-3004.8248	6042.3553	0.0000	1.0000
F81	14	-3018.4867	6065.5167	0.0000	1.0000
JC69G	12	-3037.9136	6100.2298	0.0000	1.0000
JC69IG	13	-3037.9194	6102.3091	0.0000	1.0000
JC69I	12	-3039.1328	6102.6681	0.0000	1.0000
JC69	11	-3056.8121	6135.9644	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2931.8957	5903.7913	0.5380	0.5380
GTRI	20	-2932.6491	5905.2982	0.2532	0.7912
GTRIG	21	-2931.8929	5905.7858	0.1984	0.9896
HKYG	16	-2940.4347	5912.8693	0.0057	0.9954
HKYI	16	-2941.2644	5914.5288	0.0025	0.9979
HKYIG	17	-2940.4401	5914.8803	0.0021	1.0000
GTR	19	-2949.0231	5936.0462	0.0000	1.0000
HKY	15	-2957.9790	5945.9579	0.0000	1.0000
K2PG	13	-2985.1072	5996.2144	0.0000	1.0000
K2PIG	14	-2985.1089	5998.2177	0.0000	1.0000
K2PI	13	-2986.7332	5999.4663	0.0000	1.0000
SYMG	17	-2984.4669	6002.9339	0.0000	1.0000
SYMIG	18	-2984.4685	6004.9370	0.0000	1.0000
SYMI	17	-2986.1034	6006.2068	0.0000	1.0000
F81G	15	-3001.6253	6033.2506	0.0000	1.0000
F81I	15	-3002.3038	6034.6077	0.0000	1.0000
F81IG	16	-3001.6277	6035.2554	0.0000	1.0000
K2P	12	-3005.8529	6035.7058	0.0000	1.0000
SYM	16	-3004.8248	6041.6497	0.0000	1.0000
F81	14	-3018.4867	6064.9733	0.0000	1.0000
JC69G	12	-3037.9136	6099.8272	0.0000	1.0000
JC69IG	13	-3037.9194	6101.8388	0.0000	1.0000
JC69I	12	-3039.1328	6102.2655	0.0000	1.0000
JC69	11	-3056.8121	6135.6242	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2940.4347	5987.5813	0.6739	0.6739
HKYI	16	-2941.2644	5989.2407	0.2939	0.9678
HKYIG	17	-2940.4401	5994.2617	0.0239	0.9916
GTRG	20	-2931.8957	5997.1813	0.0055	0.9972
GTRI	20	-2932.6491	5998.6881	0.0026	0.9998
GTRIG	21	-2931.8929	6003.8453	0.0002	1.0000
HKY	15	-2957.9790	6016.0004	0.0000	1.0000
GTR	19	-2949.0231	6024.7667	0.0000	1.0000
K2PG	13	-2985.1072	6056.9179	0.0000	1.0000
K2PI	13	-2986.7332	6060.1698	0.0000	1.0000
K2PIG	14	-2985.1089	6063.5907	0.0000	1.0000
SYMG	17	-2984.4669	6082.3154	0.0000	1.0000
SYMI	17	-2986.1034	6085.5883	0.0000	1.0000
SYMIG	18	-2984.4685	6088.9879	0.0000	1.0000
K2P	12	-3005.8529	6091.7398	0.0000	1.0000
F81G	15	-3001.6253	6103.2931	0.0000	1.0000
F81I	15	-3002.3038	6104.6502	0.0000	1.0000
F81IG	16	-3001.6277	6109.9673	0.0000	1.0000
SYM	16	-3004.8248	6116.3617	0.0000	1.0000
F81	14	-3018.4867	6130.3463	0.0000	1.0000
JC69G	12	-3037.9136	6155.8612	0.0000	1.0000
JC69I	12	-3039.1328	6158.2995	0.0000	1.0000
JC69IG	13	-3037.9194	6162.5423	0.0000	1.0000
JC69	11	-3056.8121	6186.9887	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_141.phylip = 1 - 788;
 Partition Dummy = 1:591-tomodel-phylip/chr8_141.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_141.phylip = 1 - 788;
 Partition Dummy = 1:591-tomodel-phylip/chr8_141.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr8_141.phylip = 1 - 788;
 Partition Dummy = 1:591-tomodel-phylip/chr8_141.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

