
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:50 04/04/2011

Input data from file "591-tomodel-phylip/chr7_5167.phylip" (7 taxa, 971 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2673.2899	5386.5798	0.5239	0.5239
GTRI	20	-2674.0225	5388.0450	0.2518	0.7757
GTRIG	21	-2673.2938	5388.5876	0.1920	0.9676
HKYG	16	-2680.7246	5393.4493	0.0169	0.9845
HKYI	16	-2681.3254	5394.6508	0.0093	0.9938
HKYIG	17	-2680.7252	5395.4503	0.0062	1.0000
GTR	19	-2684.7929	5407.5859	0.0000	1.0000
HKY	15	-2692.5470	5415.0941	0.0000	1.0000
K2PG	13	-2703.5372	5433.0744	0.0000	1.0000
SYMG	17	-2699.6283	5433.2565	0.0000	1.0000
K2PI	13	-2704.1449	5434.2897	0.0000	1.0000
SYMI	17	-2700.3182	5434.6365	0.0000	1.0000
K2PIG	14	-2703.5350	5435.0699	0.0000	1.0000
SYMIG	18	-2699.6306	5435.2612	0.0000	1.0000
SYM	16	-2711.2020	5454.4039	0.0000	1.0000
K2P	12	-2715.7577	5455.5154	0.0000	1.0000
F81G	15	-2727.7446	5485.4893	0.0000	1.0000
F81I	15	-2728.2341	5486.4681	0.0000	1.0000
F81IG	16	-2727.7470	5487.4940	0.0000	1.0000
F81	14	-2738.6766	5505.3532	0.0000	1.0000
JC69G	12	-2747.9250	5519.8500	0.0000	1.0000
JC69I	12	-2748.4428	5520.8855	0.0000	1.0000
JC69IG	13	-2747.9251	5521.8502	0.0000	1.0000
JC69	11	-2759.3087	5540.6174	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2680.7246	5471.5025	0.6316	0.6316
HKYI	16	-2681.3254	5472.7041	0.3463	0.9779
HKYIG	17	-2680.7252	5478.3819	0.0203	0.9981
GTRG	20	-2673.2899	5484.1463	0.0011	0.9993
GTRI	20	-2674.0225	5485.6115	0.0005	0.9998
HKY	15	-2692.5470	5488.2690	0.0001	1.0000
GTRIG	21	-2673.2938	5491.0324	0.0000	1.0000
K2PG	13	-2703.5372	5496.4926	0.0000	1.0000
K2PI	13	-2704.1449	5497.7079	0.0000	1.0000
GTR	19	-2684.7929	5500.2741	0.0000	1.0000
K2PIG	14	-2703.5350	5503.3665	0.0000	1.0000
K2P	12	-2715.7577	5514.0553	0.0000	1.0000
SYMG	17	-2699.6283	5516.1881	0.0000	1.0000
SYMI	17	-2700.3182	5517.5680	0.0000	1.0000
SYMIG	18	-2699.6306	5523.0711	0.0000	1.0000
SYM	16	-2711.2020	5532.4571	0.0000	1.0000
F81G	15	-2727.7446	5558.6642	0.0000	1.0000
F81I	15	-2728.2341	5559.6430	0.0000	1.0000
F81IG	16	-2727.7470	5565.5472	0.0000	1.0000
F81	14	-2738.6766	5573.6498	0.0000	1.0000
JC69G	12	-2747.9250	5578.3899	0.0000	1.0000
JC69I	12	-2748.4428	5579.4254	0.0000	1.0000
JC69IG	13	-2747.9251	5585.2684	0.0000	1.0000
JC69	11	-2759.3087	5594.2790	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_5167.phylip = 1 - 971;
 Partition Dummy = 1:591-tomodel-phylip/chr7_5167.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_5167.phylip = 1 - 971;
 Partition Dummy = 1:591-tomodel-phylip/chr7_5167.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_5167.phylip = 1 - 971;
 Partition Dummy = 1:591-tomodel-phylip/chr7_5167.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

