
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:49 04/04/2011

Input data from file "591-tomodel-phylip/chr7_4896.phylip" (7 taxa, 961 characters)

Minimum AIC  model: HKYI
Minimum AICc model: HKYI
Minimum BIC  model: HKYI


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYI	16	-2971.0887	5974.1775	0.4663	0.4663
HKYG	16	-2971.9929	5975.9859	0.1888	0.6551
HKYIG	17	-2971.0868	5976.1736	0.1719	0.8269
GTRI	20	-2968.6080	5977.2159	0.1021	0.9290
GTRIG	21	-2968.6091	5979.2181	0.0375	0.9665
GTRG	20	-2969.7221	5979.4441	0.0335	1.0000
HKY	15	-3000.1337	6030.2675	0.0000	1.0000
GTR	19	-2997.8930	6033.7860	0.0000	1.0000
K2PG	13	-3048.4606	6122.9212	0.0000	1.0000
K2PI	13	-3048.4887	6122.9774	0.0000	1.0000
K2PIG	14	-3048.3079	6124.6159	0.0000	1.0000
F81I	15	-3048.9826	6127.9652	0.0000	1.0000
SYMG	17	-3047.1697	6128.3395	0.0000	1.0000
SYMI	17	-3047.4817	6128.9635	0.0000	1.0000
F81G	15	-3049.8951	6129.7901	0.0000	1.0000
F81IG	16	-3048.9889	6129.9778	0.0000	1.0000
SYMIG	18	-3047.1774	6130.3548	0.0000	1.0000
F81	14	-3074.3155	6176.6309	0.0000	1.0000
K2P	12	-3077.1269	6178.2538	0.0000	1.0000
SYM	16	-3076.3404	6184.6808	0.0000	1.0000
JC69I	12	-3111.9772	6247.9545	0.0000	1.0000
JC69G	12	-3112.4651	6248.9302	0.0000	1.0000
JC69IG	13	-3111.9727	6249.9455	0.0000	1.0000
JC69	11	-3137.7618	6297.5236	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-2971.0887	6052.0651	0.6958	0.6958
HKYG	16	-2971.9929	6053.8735	0.2817	0.9775
HKYIG	17	-2971.0868	6058.9291	0.0225	1.0000
GTRI	20	-2968.6080	6074.5754	0.0000	1.0000
GTRG	20	-2969.7221	6076.8036	0.0000	1.0000
GTRIG	21	-2968.6091	6081.4456	0.0000	1.0000
HKY	15	-3000.1337	6103.2871	0.0000	1.0000
GTR	19	-2997.8930	6126.2775	0.0000	1.0000
K2PG	13	-3048.4606	6186.2048	0.0000	1.0000
K2PI	13	-3048.4887	6186.2610	0.0000	1.0000
K2PIG	14	-3048.3079	6192.7675	0.0000	1.0000
F81I	15	-3048.9826	6200.9848	0.0000	1.0000
F81G	15	-3049.8951	6202.8097	0.0000	1.0000
F81IG	16	-3048.9889	6207.8654	0.0000	1.0000
SYMG	17	-3047.1697	6211.0950	0.0000	1.0000
SYMI	17	-3047.4817	6211.7190	0.0000	1.0000
SYMIG	18	-3047.1774	6217.9784	0.0000	1.0000
K2P	12	-3077.1269	6236.6695	0.0000	1.0000
F81	14	-3074.3155	6244.7826	0.0000	1.0000
SYM	16	-3076.3404	6262.5684	0.0000	1.0000
JC69I	12	-3111.9772	6306.3702	0.0000	1.0000
JC69G	12	-3112.4651	6307.3459	0.0000	1.0000
JC69IG	13	-3111.9727	6313.2291	0.0000	1.0000
JC69	11	-3137.7618	6351.0713	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_4896.phylip = 1 - 961;
 Partition Dummy = 1:591-tomodel-phylip/chr7_4896.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_4896.phylip = 1 - 961;
 Partition Dummy = 1:591-tomodel-phylip/chr7_4896.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_4896.phylip = 1 - 961;
 Partition Dummy = 1:591-tomodel-phylip/chr7_4896.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


-------------------------------------------------------------
End of Output

