
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:47 04/04/2011

Input data from file "591-tomodel-phylip/chr7_4726.phylip" (7 taxa, 906 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2717.6590	5475.3180	0.6056	0.6056
GTRIG	21	-2717.5771	5477.1541	0.2418	0.8474
GTRI	20	-2719.0408	5478.0815	0.1521	0.9995
HKYG	16	-2729.2258	5490.4517	0.0003	0.9998
HKYIG	17	-2729.0865	5492.1730	0.0001	0.9999
HKYI	16	-2730.5095	5493.0189	0.0001	1.0000
GTR	19	-2757.5930	5553.1859	0.0000	1.0000
HKY	15	-2769.8560	5569.7120	0.0000	1.0000
K2PG	13	-2773.8403	5573.6805	0.0000	1.0000
SYMG	17	-2769.9998	5573.9996	0.0000	1.0000
K2PIG	14	-2773.6702	5575.3404	0.0000	1.0000
SYMIG	18	-2769.9305	5575.8610	0.0000	1.0000
SYMI	17	-2771.0363	5576.0727	0.0000	1.0000
K2PI	13	-2775.2339	5576.4678	0.0000	1.0000
F81G	15	-2789.0751	5608.1502	0.0000	1.0000
F81I	15	-2789.8010	5609.6019	0.0000	1.0000
F81IG	16	-2789.0875	5610.1749	0.0000	1.0000
SYM	16	-2810.5474	5653.0948	0.0000	1.0000
K2P	12	-2815.3044	5654.6087	0.0000	1.0000
JC69G	12	-2826.0424	5676.0848	0.0000	1.0000
JC69I	12	-2826.8545	5677.7091	0.0000	1.0000
JC69IG	13	-2826.0367	5678.0733	0.0000	1.0000
F81	14	-2826.8900	5681.7801	0.0000	1.0000
JC69	11	-2865.2848	5752.5697	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2729.2258	5567.3963	0.6753	0.6753
HKYI	16	-2730.5095	5569.9635	0.1871	0.8624
GTRG	20	-2717.6590	5571.4988	0.0868	0.9493
HKYIG	17	-2729.0865	5573.9266	0.0258	0.9751
GTRI	20	-2719.0408	5574.2623	0.0218	0.9969
GTRIG	21	-2717.5771	5578.1440	0.0031	1.0000
K2PG	13	-2773.8403	5636.1980	0.0000	1.0000
K2PI	13	-2775.2339	5638.9853	0.0000	1.0000
HKY	15	-2769.8560	5641.8475	0.0000	1.0000
K2PIG	14	-2773.6702	5642.6669	0.0000	1.0000
GTR	19	-2757.5930	5644.5577	0.0000	1.0000
SYMG	17	-2769.9998	5655.7533	0.0000	1.0000
SYMI	17	-2771.0363	5657.8264	0.0000	1.0000
SYMIG	18	-2769.9305	5662.4237	0.0000	1.0000
F81G	15	-2789.0751	5680.2858	0.0000	1.0000
F81I	15	-2789.8010	5681.7375	0.0000	1.0000
F81IG	16	-2789.0875	5687.1195	0.0000	1.0000
K2P	12	-2815.3044	5712.3172	0.0000	1.0000
SYM	16	-2810.5474	5730.0394	0.0000	1.0000
JC69G	12	-2826.0424	5733.7933	0.0000	1.0000
JC69I	12	-2826.8545	5735.4176	0.0000	1.0000
JC69IG	13	-2826.0367	5740.5908	0.0000	1.0000
F81	14	-2826.8900	5749.1067	0.0000	1.0000
JC69	11	-2865.2848	5805.4691	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_4726.phylip = 1 - 906;
 Partition Dummy = 1:591-tomodel-phylip/chr7_4726.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_4726.phylip = 1 - 906;
 Partition Dummy = 1:591-tomodel-phylip/chr7_4726.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_4726.phylip = 1 - 906;
 Partition Dummy = 1:591-tomodel-phylip/chr7_4726.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

