
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:53 04/04/2011

Input data from file "591-tomodel-phylip/chr7_4505.phylip" (7 taxa, 747 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2514.9173	5070.9917	0.6766	0.6766
GTRIG	21	-2514.9173	5073.1091	0.2347	0.9114
HKYG	16	-2521.6402	5076.0257	0.0546	0.9660
HKYIG	17	-2521.6402	5078.1200	0.0192	0.9851
GTRI	20	-2518.8657	5078.8883	0.0131	0.9982
HKYI	16	-2525.0407	5082.8267	0.0018	1.0000
GTR	19	-2532.9721	5104.9896	0.0000	1.0000
HKY	15	-2539.1741	5109.0048	0.0000	1.0000
K2PG	13	-2577.9186	5182.3337	0.0000	1.0000
K2PIG	14	-2577.9191	5184.4120	0.0000	1.0000
SYMG	17	-2575.5304	5185.9002	0.0000	1.0000
K2PI	13	-2580.7414	5187.9793	0.0000	1.0000
SYMIG	18	-2575.5365	5188.0126	0.0000	1.0000
SYMI	17	-2578.6692	5192.1778	0.0000	1.0000
K2P	12	-2597.5021	5219.4292	0.0000	1.0000
SYM	16	-2594.8367	5222.4185	0.0000	1.0000
F81G	15	-2604.7713	5240.1993	0.0000	1.0000
F81IG	16	-2604.7733	5242.2918	0.0000	1.0000
F81I	15	-2606.7931	5244.2429	0.0000	1.0000
F81	14	-2621.1865	5270.9467	0.0000	1.0000
JC69G	12	-2650.6312	5325.6875	0.0000	1.0000
JC69IG	13	-2650.6315	5327.7596	0.0000	1.0000
JC69I	12	-2652.5869	5329.5988	0.0000	1.0000
JC69	11	-2668.0242	5358.4075	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2514.9173	5069.8347	0.6760	0.6760
GTRIG	21	-2514.9173	5071.8346	0.2487	0.9247
HKYG	16	-2521.6402	5075.2805	0.0444	0.9691
HKYIG	17	-2521.6402	5077.2805	0.0163	0.9855
GTRI	20	-2518.8657	5077.7313	0.0130	0.9985
HKYI	16	-2525.0407	5082.0815	0.0015	1.0000
GTR	19	-2532.9721	5103.9442	0.0000	1.0000
HKY	15	-2539.1741	5108.3482	0.0000	1.0000
K2PG	13	-2577.9186	5181.8371	0.0000	1.0000
K2PIG	14	-2577.9191	5183.8382	0.0000	1.0000
SYMG	17	-2575.5304	5185.0607	0.0000	1.0000
SYMIG	18	-2575.5365	5187.0730	0.0000	1.0000
K2PI	13	-2580.7414	5187.4827	0.0000	1.0000
SYMI	17	-2578.6692	5191.3383	0.0000	1.0000
K2P	12	-2597.5021	5219.0042	0.0000	1.0000
SYM	16	-2594.8367	5221.6733	0.0000	1.0000
F81G	15	-2604.7713	5239.5427	0.0000	1.0000
F81IG	16	-2604.7733	5241.5466	0.0000	1.0000
F81I	15	-2606.7931	5243.5863	0.0000	1.0000
F81	14	-2621.1865	5270.3729	0.0000	1.0000
JC69G	12	-2650.6312	5325.2624	0.0000	1.0000
JC69IG	13	-2650.6315	5327.2630	0.0000	1.0000
JC69I	12	-2652.5869	5329.1738	0.0000	1.0000
JC69	11	-2668.0242	5358.0483	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2521.6402	5149.1375	0.9333	0.9333
HKYIG	17	-2521.6402	5155.7536	0.0341	0.9674
HKYI	16	-2525.0407	5155.9385	0.0311	0.9985
GTRG	20	-2514.9173	5162.1560	0.0014	0.9999
GTRIG	21	-2514.9173	5168.7719	0.0001	1.0000
GTRI	20	-2518.8657	5170.0526	0.0000	1.0000
HKY	15	-2539.1741	5177.5891	0.0000	1.0000
GTR	19	-2532.9721	5191.6495	0.0000	1.0000
K2PG	13	-2577.9186	5241.8460	0.0000	1.0000
K2PI	13	-2580.7414	5247.4916	0.0000	1.0000
K2PIG	14	-2577.9191	5248.4631	0.0000	1.0000
SYMG	17	-2575.5304	5263.5338	0.0000	1.0000
SYMI	17	-2578.6692	5269.8114	0.0000	1.0000
SYMIG	18	-2575.5365	5270.1622	0.0000	1.0000
K2P	12	-2597.5021	5274.3969	0.0000	1.0000
SYM	16	-2594.8367	5295.5304	0.0000	1.0000
F81G	15	-2604.7713	5308.7837	0.0000	1.0000
F81I	15	-2606.7931	5312.8273	0.0000	1.0000
F81IG	16	-2604.7733	5315.4036	0.0000	1.0000
F81	14	-2621.1865	5334.9979	0.0000	1.0000
JC69G	12	-2650.6312	5380.6552	0.0000	1.0000
JC69I	12	-2652.5869	5384.5666	0.0000	1.0000
JC69IG	13	-2650.6315	5387.2719	0.0000	1.0000
JC69	11	-2668.0242	5408.8250	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_4505.phylip = 1 - 747;
 Partition Dummy = 1:591-tomodel-phylip/chr7_4505.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_4505.phylip = 1 - 747;
 Partition Dummy = 1:591-tomodel-phylip/chr7_4505.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_4505.phylip = 1 - 747;
 Partition Dummy = 1:591-tomodel-phylip/chr7_4505.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

