
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:53 04/04/2011

Input data from file "591-tomodel-phylip/chr7_2753.phylip" (7 taxa, 910 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-3035.6826	6103.3653	0.5019	0.5019
HKYIG	17	-3035.6619	6105.3238	0.1885	0.6904
GTRG	20	-3032.7404	6105.4808	0.1743	0.8647
GTRIG	21	-3032.7270	6107.4539	0.0650	0.9297
HKYI	16	-3037.9394	6107.8789	0.0525	0.9822
GTRI	20	-3035.0242	6110.0484	0.0178	1.0000
SYMG	17	-3065.8731	6165.7463	0.0000	1.0000
K2PG	13	-3070.1209	6166.2417	0.0000	1.0000
SYMIG	18	-3065.8656	6167.7312	0.0000	1.0000
K2PIG	14	-3070.1129	6168.2257	0.0000	1.0000
K2PI	13	-3072.3468	6170.6935	0.0000	1.0000
SYMI	17	-3068.3637	6170.7273	0.0000	1.0000
HKY	15	-3074.1665	6178.3329	0.0000	1.0000
GTR	19	-3071.3245	6180.6489	0.0000	1.0000
F81G	15	-3079.1267	6188.2534	0.0000	1.0000
F81IG	16	-3079.1273	6190.2545	0.0000	1.0000
F81I	15	-3081.3832	6192.7663	0.0000	1.0000
SYM	16	-3102.2701	6236.5403	0.0000	1.0000
K2P	12	-3106.6833	6237.3665	0.0000	1.0000
JC69G	12	-3107.8119	6239.6237	0.0000	1.0000
JC69IG	13	-3107.8096	6241.6193	0.0000	1.0000
JC69I	12	-3110.0399	6244.0798	0.0000	1.0000
F81	14	-3114.1190	6256.2380	0.0000	1.0000
JC69	11	-3142.0754	6306.1508	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3035.6826	6180.3804	0.8783	0.8783
HKYI	16	-3037.9394	6184.8940	0.0919	0.9703
HKYIG	17	-3035.6619	6187.1523	0.0297	1.0000
GTRG	20	-3032.7404	6201.7497	0.0000	1.0000
GTRI	20	-3035.0242	6206.3173	0.0000	1.0000
GTRIG	21	-3032.7270	6208.5363	0.0000	1.0000
K2PG	13	-3070.1209	6228.8165	0.0000	1.0000
K2PI	13	-3072.3468	6233.2683	0.0000	1.0000
K2PIG	14	-3070.1129	6235.6139	0.0000	1.0000
SYMG	17	-3065.8731	6247.5748	0.0000	1.0000
HKY	15	-3074.1665	6250.5346	0.0000	1.0000
SYMI	17	-3068.3637	6252.5559	0.0000	1.0000
SYMIG	18	-3065.8656	6254.3732	0.0000	1.0000
F81G	15	-3079.1267	6260.4551	0.0000	1.0000
F81I	15	-3081.3832	6264.9680	0.0000	1.0000
F81IG	16	-3079.1273	6267.2697	0.0000	1.0000
GTR	19	-3071.3245	6272.1044	0.0000	1.0000
K2P	12	-3106.6833	6295.1278	0.0000	1.0000
JC69G	12	-3107.8119	6297.3850	0.0000	1.0000
JC69I	12	-3110.0399	6301.8411	0.0000	1.0000
JC69IG	13	-3107.8096	6304.1941	0.0000	1.0000
SYM	16	-3102.2701	6313.5554	0.0000	1.0000
F81	14	-3114.1190	6323.6262	0.0000	1.0000
JC69	11	-3142.0754	6359.0987	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_2753.phylip = 1 - 910;
 Partition Dummy = 1:591-tomodel-phylip/chr7_2753.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_2753.phylip = 1 - 910;
 Partition Dummy = 1:591-tomodel-phylip/chr7_2753.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_2753.phylip = 1 - 910;
 Partition Dummy = 1:591-tomodel-phylip/chr7_2753.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

