
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:51 04/04/2011

Input data from file "591-tomodel-phylip/chr7_1396.phylip" (7 taxa, 453 characters)

Minimum AIC  model: SYMG
Minimum AICc model: SYMG
Minimum BIC  model: SYMG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
SYMG	17	-1438.0884	2911.5837	0.4991	0.4991
SYMIG	18	-1438.0338	2913.6437	0.1782	0.6772
GTRG	20	-1435.9305	2913.8053	0.1643	0.8416
SYMI	17	-1439.9578	2915.3226	0.0770	0.9185
GTRIG	21	-1435.8738	2915.8915	0.0579	0.9765
GTRI	20	-1437.8742	2917.6928	0.0235	1.0000
HKYG	16	-1450.5456	2934.3388	0.0000	1.0000
K2PG	13	-1454.1824	2935.1940	0.0000	1.0000
HKYIG	17	-1450.4724	2936.3517	0.0000	1.0000
K2PIG	14	-1454.0810	2937.1208	0.0000	1.0000
HKYI	16	-1453.1541	2939.5559	0.0000	1.0000
K2PI	13	-1456.7773	2940.3838	0.0000	1.0000
GTR	19	-1452.0202	2943.7956	0.0000	1.0000
SYM	16	-1455.4787	2944.2052	0.0000	1.0000
HKY	15	-1466.5603	2964.2189	0.0000	1.0000
K2P	12	-1471.1647	2967.0384	0.0000	1.0000
F81G	15	-1482.6832	2996.4649	0.0000	1.0000
JC69G	12	-1486.7131	2998.1353	0.0000	1.0000
F81IG	16	-1482.6729	2998.5936	0.0000	1.0000
F81I	15	-1484.2656	2999.6296	0.0000	1.0000
JC69IG	13	-1486.6989	3000.2270	0.0000	1.0000
JC69I	12	-1488.2775	3001.2642	0.0000	1.0000
F81	14	-1495.9720	3020.9028	0.0000	1.0000
JC69	11	-1500.4546	3023.5079	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
SYMG	17	-1438.0884	2910.1768	0.4539	0.4539
GTRG	20	-1435.9305	2911.8609	0.1956	0.6495
SYMIG	18	-1438.0338	2912.0676	0.1764	0.8259
GTRIG	21	-1435.8738	2913.7476	0.0761	0.9020
SYMI	17	-1439.9578	2913.9157	0.0700	0.9720
GTRI	20	-1437.8742	2915.7483	0.0280	1.0000
HKYG	16	-1450.5456	2933.0911	0.0000	1.0000
K2PG	13	-1454.1824	2934.3649	0.0000	1.0000
HKYIG	17	-1450.4724	2934.9448	0.0000	1.0000
K2PIG	14	-1454.0810	2936.1619	0.0000	1.0000
HKYI	16	-1453.1541	2938.3082	0.0000	1.0000
K2PI	13	-1456.7773	2939.5547	0.0000	1.0000
GTR	19	-1452.0202	2942.0404	0.0000	1.0000
SYM	16	-1455.4787	2942.9575	0.0000	1.0000
HKY	15	-1466.5603	2963.1205	0.0000	1.0000
K2P	12	-1471.1647	2966.3293	0.0000	1.0000
F81G	15	-1482.6832	2995.3665	0.0000	1.0000
F81IG	16	-1482.6729	2997.3459	0.0000	1.0000
JC69G	12	-1486.7131	2997.4262	0.0000	1.0000
F81I	15	-1484.2656	2998.5312	0.0000	1.0000
JC69IG	13	-1486.6989	2999.3978	0.0000	1.0000
JC69I	12	-1488.2775	3000.5551	0.0000	1.0000
F81	14	-1495.9720	3019.9439	0.0000	1.0000
JC69	11	-1500.4546	3022.9093	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
SYMG	17	-1438.0884	2980.1470	0.8139	0.8139
SYMI	17	-1439.9578	2983.8858	0.1255	0.9394
SYMIG	18	-1438.0338	2986.1537	0.0404	0.9798
K2PG	13	-1454.1824	2987.8715	0.0171	0.9969
K2PI	13	-1456.7773	2993.0613	0.0013	0.9982
K2PIG	14	-1454.0810	2993.7844	0.0009	0.9991
GTRG	20	-1435.9305	2994.1787	0.0007	0.9998
GTRI	20	-1437.8742	2998.0662	0.0001	0.9999
HKYG	16	-1450.5456	2998.9454	0.0001	1.0000
GTRIG	21	-1435.8738	3000.1814	0.0000	1.0000
HKYI	16	-1453.1541	3004.1625	0.0000	1.0000
HKYIG	17	-1450.4724	3004.9150	0.0000	1.0000
SYM	16	-1455.4787	3008.8118	0.0000	1.0000
K2P	12	-1471.1647	3015.7200	0.0000	1.0000
GTR	19	-1452.0202	3020.2424	0.0000	1.0000
HKY	15	-1466.5603	3024.8589	0.0000	1.0000
JC69G	12	-1486.7131	3046.8169	0.0000	1.0000
JC69I	12	-1488.2775	3049.9458	0.0000	1.0000
JC69IG	13	-1486.6989	3052.9044	0.0000	1.0000
F81G	15	-1482.6832	3057.1048	0.0000	1.0000
F81I	15	-1484.2656	3060.2695	0.0000	1.0000
F81IG	16	-1482.6729	3063.2002	0.0000	1.0000
JC69	11	-1500.4546	3068.1841	0.0000	1.0000
F81	14	-1495.9720	3077.5664	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (SYMG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_1396.phylip = 1 - 453;
 Partition Dummy = 1:591-tomodel-phylip/chr7_1396.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Fixed(Equal);
END;


[Mrbayes block for the best AICc model (SYMG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_1396.phylip = 1 - 453;
 Partition Dummy = 1:591-tomodel-phylip/chr7_1396.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Fixed(Equal);
END;


[Mrbayes block for the best BIC model (SYMG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_1396.phylip = 1 - 453;
 Partition Dummy = 1:591-tomodel-phylip/chr7_1396.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Fixed(Equal);
END;


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End of Output

