
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:51 04/04/2011

Input data from file "591-tomodel-phylip/chr7_1380.phylip" (7 taxa, 853 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2918.8690	5877.7381	0.6889	0.6889
GTRIG	21	-2918.6982	5879.3964	0.3006	0.9895
GTRI	20	-2923.0698	5886.1396	0.0103	0.9998
SYMG	17	-2930.6705	5895.3409	0.0001	0.9999
SYMIG	18	-2930.4518	5896.9037	0.0000	1.0000
HKYG	16	-2936.1137	5904.2274	0.0000	1.0000
SYMI	17	-2935.2225	5904.4451	0.0000	1.0000
HKYIG	17	-2936.0358	5906.0717	0.0000	1.0000
HKYI	16	-2939.2365	5910.4730	0.0000	1.0000
K2PG	13	-2950.3380	5926.6759	0.0000	1.0000
K2PIG	14	-2950.2686	5928.5372	0.0000	1.0000
K2PI	13	-2953.4744	5932.9488	0.0000	1.0000
F81G	15	-2963.0470	5956.0939	0.0000	1.0000
F81IG	16	-2962.9796	5957.9591	0.0000	1.0000
F81I	15	-2965.6618	5961.3237	0.0000	1.0000
GTR	19	-2970.8849	5979.7698	0.0000	1.0000
JC69G	12	-2980.2534	5984.5068	0.0000	1.0000
JC69IG	13	-2980.1775	5986.3549	0.0000	1.0000
JC69I	12	-2983.0048	5990.0097	0.0000	1.0000
SYM	16	-2982.9009	5997.8017	0.0000	1.0000
HKY	15	-2988.6935	6007.3870	0.0000	1.0000
K2P	12	-3002.0988	6028.1977	0.0000	1.0000
F81	14	-3014.3296	6056.6591	0.0000	1.0000
JC69	11	-3030.9624	6083.9249	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-2918.8690	5972.7133	0.7824	0.7824
SYMG	17	-2930.6705	5976.0698	0.1461	0.9285
GTRIG	21	-2918.6982	5979.1204	0.0318	0.9602
HKYG	16	-2936.1137	5980.2076	0.0185	0.9787
GTRI	20	-2923.0698	5981.1148	0.0117	0.9904
SYMIG	18	-2930.4518	5982.3814	0.0062	0.9966
SYMI	17	-2935.2225	5985.1740	0.0015	0.9982
HKYI	16	-2939.2365	5986.4531	0.0008	0.9990
HKYIG	17	-2936.0358	5986.8006	0.0007	0.9997
K2PG	13	-2950.3380	5988.4098	0.0003	1.0000
K2PI	13	-2953.4744	5994.6827	0.0000	1.0000
K2PIG	14	-2950.2686	5995.0199	0.0000	1.0000
F81G	15	-2963.0470	6027.3253	0.0000	1.0000
F81I	15	-2965.6618	6032.5551	0.0000	1.0000
F81IG	16	-2962.9796	6033.9393	0.0000	1.0000
JC69G	12	-2980.2534	6041.4919	0.0000	1.0000
JC69I	12	-2983.0048	6046.9948	0.0000	1.0000
JC69IG	13	-2980.1775	6048.0888	0.0000	1.0000
GTR	19	-2970.8849	6069.9963	0.0000	1.0000
SYM	16	-2982.9009	6073.7819	0.0000	1.0000
HKY	15	-2988.6935	6078.6184	0.0000	1.0000
K2P	12	-3002.0988	6085.1828	0.0000	1.0000
F81	14	-3014.3296	6123.1418	0.0000	1.0000
JC69	11	-3030.9624	6136.1612	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_1380.phylip = 1 - 853;
 Partition Dummy = 1:591-tomodel-phylip/chr7_1380.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_1380.phylip = 1 - 853;
 Partition Dummy = 1:591-tomodel-phylip/chr7_1380.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_1380.phylip = 1 - 853;
 Partition Dummy = 1:591-tomodel-phylip/chr7_1380.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

